Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Bee Research Methods: Video Demonstrations

    • This collection shows bee behaviors and methods used to study bee behaviors.
    • Creation Date: 2005-2014
  2. Teaching Bee

    • This collection of documents provides teaching exercises and information for instructors of students ranging from junior high school through college.
    • Creation Date: 2005-2013
  3. dataMares: Ecosystem Dynamics

    • The datasets in this collection are used for analyses on relationships between different ecosystems, as well as humans and the habitats surrounding us, to elucidate the impact that anthropogenic activities have on the environment.
    • Creation Date: 2014 to 2016
  4. dataMares: Fisheries

    • This collection contains robust, high-quality scientific information related to Mexico-specific ocean fisheries and their relationship to marine reserves, coastal and marine ecosystems, and climate change. It also contains datasets with information on fishing activities collected with the participation of local fishermen.
    • Creation Date: 1950-01-01 to 2014-08-01,
  5. Santa Fe Light Cone Simulation research project files

    • This project was the result of an ongoing effort by the Laboratory for Computational Astrophysics, leading to development of the Enzo simulation software capable of a seven-level adaptive mesh refinement (AMR) cosmology simulation.
    • Creation Date: 2005-2012
  6. Data from: 'Whale Wave': shifting strategies structure the complex use of critical fjord habitat by humpbacks

    • This collection contains the data, R programming files, and detailed protocols for various aspects of analysis for the publication: Keen et al. 2016. "Whale Wave": shifting strategies structure the complex use of critical fjord habitat by humpbacks.
    • Creation Date: 2005 - 2015,
  7. Data from: Allostery through the Computational Microscope: cAMP Activation of a Canonical Signalling Domain

    • This collection contains the molecular dynamics trajectories scripts and models used in the paper “Allostery through the computational microscope: cAMP activation of a canonical signalling domain”.
    • Creation Date: 2014-08-24
  8. Data from: Electrostatic interactions as mediators in the allosteric activation of PKA RIalpha

    • Molecular dynamics input files, trajectories and analysis scripts used in the paper "Electrostatic interactions as mediators in the allosteric network of PKA RIalpha".
    • Creation Date: 2015-09-15,
  9. Data from: Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning

    • The kinetic rate constants of four biochemically relevant ligand-receptor systems were estimated and described in a publication. This collection includes input files, output files, trajectories, and statistics associated with the study.
    • Creation Date: 2013-2015
  10. Data from: The Agricultural Productivity Gap

    • Dataset contains data by country for about 150 countries on GDP per capita, employment share in agriculture, value added share in agriculture, agricultural productivity gap, average hours worked, years of schooling, and human capital.
    • Creation Date: 1988-2011,
  11. The CONNected objeECT, or CONNECT algorithm applied to National Aeronautics and Space Administration (NASA) Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA V2) - Integrated Water Vapor from 1980 to 2016

    • The CONNected objECT (CONNECT) algorithm is applied to global Integrated Water Vapor Transport (IVT) data from the NASA’s Modern-Era Retrospective Analysis for Research and Applications – Version 2 reanalysis product for the period 1980 to 2016.
    • Creation Date: 2016
  12. California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic and Trawl Data

    • This is a voluminous data set containing acoustic and trawl data collected on CalCOFI (California Cooperative Oceanic Fisheries Investigations) cruises.
    • Creation Date: 2009 to 2015,
  13. CAVEcam Virtual Reality Photography Collection

    • Full-surround 3-D images make up this collection of original and rendered composite images called CAVEcams which are very high-resolution images for both left and right eye, normally viewed in virtual reality systems, either CAVEs or HMDs.
    • Creation Date: 2009 - present,
  14. Data from: A Living Vector Field Reveals Constraints on Galactose Network Induction in Yeast

    • To study how cellular traits produce population phenotypes, we built living vector fields from single-cell timecourses of the proteins Gal3p and Gal1p as yeast switched to galactose from other nutrients. This collection has data and analysis codes.
    • Creation Date: 2015-2016,
  15. Scripps CO2 Program Data

    • This collection contains measurements of atmospheric CO2 concentration and isotopic abundances at an array of stations, from the Arctic to Antarctica.
    • Creation Date: 1957 - present
  16. Data from: Exploration and Explanation in Computational Notebooks

    • Analysis of approximately 1.25 million Jupyter Notebooks downloaded from public repositories on GitHub in July 2017.
    • Creation Date: July 2017
  17. Khirbat en-Nahas Project (Jordan)

    • A collection of archaeological artifacts and data for the excavation of the Khirbat en-Nahas site, and exploration of Iron Age state formation in southern Jordan.
    • Creation Date: 2002-2009
  18. dataMares: Ecological Monitoring

    • This collection contains databases from regular surveys conducted to track annual changes in the structure, function, and health of marine ecosystems, as well as organisms like fishes and invertebrates at numerous island and coastal sites.
    • Creation Date: 1998 to 2015
  19. Kastrouli Mycenaean Excavations, Greece 2016

    • Files relevant to the 2016 archaeological excavations of the site Kastrouli, Greece including artifact, photography, geospatial, and other data.
    • Creation Date: July 20 – August 3, 2016,
  20. Aerosol and Cloud Observations in La Jolla, CA, in May-June 2011 during SOLEDAD (Stratocumulus Observations of Los-Angeles Emissions Derived Aerosol-Droplets)

    • Measurements of polluted marine aerosol and cloud droplet chemical and physical properties at Mt. Soledad and Scripps Pier in La Jolla, California.
    • Creation Date: 01 May 2012 to 18 June 2012