Browse by Collection: UCSD Research Data Collections

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1. 
   Collection

   Scripps-KAUST Regional Integrated Prediction System (SKRIPS)

   • A regional coupled ocean–atmosphere model (based on MITgm, WRF, and ESMF) to study air--sea feedbacks.
   • Date: 2019
2. 
   Collection

   Data from: Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking

   • All structures and RMSDs used in Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking are provided here.
   • Date: 2017 to 2018
3. 
   Collection

   Data from: Increasing STEM Undergraduate Participation in Innovative Activities: Field Experimental Evidence

   • Measures of performance on an innovation contest by whether or not participants receive randomized encouragement, and whether participants self-selected into the contest or joined after receiving a monetary inducement for doing so.
   • Date: 2017-01 to 2017-07
4. 
   Collection

   Plant-pollinator interaction networks in coastal sage scrub reserves and fragments in San Diego

   • Data here describe the interactions between plants and putative pollinators in large natural reserves (area > 500 ha; n = 6) and small habitat fragments (area < 60 ha; n = 6) of coastal sage scrub habitat.
   • Date: 2015 to 2016
5. 
   Collection

   Scripps O2 Program Data

   • The Scripps O2 Program website at https://scrippso2.ucsd.edu provides access to openly available atmospheric O2/N2 ratio and CO2 concentration data from various sources along with graphics. Redundant copies of the atmospheric O2/N2 and CO2 data from 12 sampling stations are being deposited here, through the UC San Diego Library, to provide enhanced discovery, long-term accessibility, and preservation. The latest data archives from the 10 active stations are added to this collection as they become available.
   • Date: 1989 to present
6. 
   Collection

   Data from Scripps Research Expeditions 1953-2005

   • Data and documents from Scripps Institution of Oceanography research vessel expeditions from 1953-2005, including geophysical, water column, and sea surface measurements.
   • Date: 1953 to 2005
7. 
   Collection

   California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic Fisheries Data (2017- )

   • Non-calibrated multi-frequency acoustic fisheries data (.raw files) collected aboard RV Sally Ride on the November 2017 CalCOFI (California Cooperative Fisheries Investigations) cruise
   • Date: 2017-11-09 to 2017-11-24
8. Collection

   Data from: Seasonal cycle and annual reversal of the Somali Current in an eddy-resolving global ocean model

   • The dataset includes a subset of model output from a global 0.1-deg CORE-II forced POP simulation near the region of the Arabian Sea, supporting the Journal of Geophysical Research: Oceans article with the same name.
   • Date: 2005 to 2009
9. 
   Collection

   Data from: Southern California Coastal Response to the 2015-16 El Niño

   • Airborne lidar datasets collected on 6-October-2015 and 22-March-2016, and processed into 1-m resolution digital elevation models.
   • Date: 2015 to 2016
10. 
    Collection

    Oceanographic data taken over a fringing coral reef near Makua Beach, Oahu, Hawai'i (2013)

    • Raw and averaged velocity, temperature, salinity, and pressure data from a coral reef in southwestern Oahu, Hawai'i.
    • Date: 2013-09-06 to 2013-09-30
11. 
    Collection

    Data from: Structural basis for ligand modulation of the CCR2 conformational landscape

    • This collection contains the molecular dynamics trajectories and analysis scripts used in the paper “Structural basis for ligand modulation of the CCR2 conformational landscape”.
    • Date: 2017 to 2018
12. 
    Collection

    Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

    • This collection includes the remote sensing dataset recorded at Çatalhöyük, Turkey, between 2012-2017. The deterioration of earthen architecture through time was assessed by comparing these 3-D data and with geo spatial methods.
    • Date: 2012 to 2017
13. 
    Collection

    Data from: Measuring Seafloor Strain with an Optical Fiber Interferometer

    • A 95.5 day long record of earth strain collected on the seafloor 95 km offshore Oregon was collected (ocean depth was 1910 m). The instrument used was a 200-m-long optical fiber cable, stretched between two anchors in an east-west line.
    • Date: 2015-10-24 to 2016-01-27
14. 
    Collection

    Data from: The Influence of Cloudiness on Hydrologic Fluctuations in the Mountains of the Western United States

    • Daily cloud cover indices derived from 4x4 km GOES visible albedo product for snow pillow sites and stream gauges in the mountains of the western U.S.
    • Date: 1996-01-01 to 2015-12-31
15. 
    Collection

    Data from: Carbon and Oxygen Isotopic Fractionation in the Products of Low-Temperature VUV Photodissociation of Carbon Monoxide

    • Carbon and oxygen isotopic fractionation during photodissociation by VUV photons. This Matlab based model only calculates the isotope effect in the self-shielding process and not by any other means (e.g., predissociation). Data files are included.
    • Date: 2016 to 2018
16. 
    Collection

    Data from: Episodic Southern Ocean heat loss and its mixed layer impacts revealed by the furthest south multi-year surface flux mooring

    • This dataset contains Quality Controlled daily mean air-sea heat flux estimates from the NSF Ocean Observatories Initiative Southern Ocean mooring site for the period 2015 to 2017, as used in the analysis of Ogle et al. 2018 (doi:10.1029/2017GL076909)
    • Date: 2015 to 2017
17. 
    Collection

    Aerosol Particle Chemical and Physical Measurements on the 2015, 2016, 2017, and 2018 North Atlantic Aerosols and Marine Ecosystems Study (NAAMES) Research Cruises

    • Size distributions, organic functional groups, and non-refractory and single particle composition of North Atlantic marine aerosol particles
    • Date: 2015-11-06 to 2015-11-30; 2016-05-11 to 2016-06-05; 2017-08-30 to 2017-09-24; 2018-03-20 to 2018-04-13
18. 
    Collection

    Data from: Latent profile analysis of objectively measured sleep, physical activity, and sedentary time and associations with health in adult women

    • This dataset represents the analysis variables for a group of 372 women collected at 4 different sites across the United States, including sleep quality, physical activity and sedentary behaviors.
    • Date: 2012-10-10 to 2014-01-13
19. 
    Collection

    Data from: Climate change intensification of horizontal water vapor transport in CMIP5

    • The dataset contains simulations of water vapor transport from 22 CMIP5 models including the historical, RCP4.5, and RCP8.5 runs.
    • Date: 2014 to 2015
20. 
    Collection

    Data from: Exploration and Explanation in Computational Notebooks

    • Analysis of approximately 1.25 million Jupyter Notebooks downloaded from public repositories on GitHub in July 2017.
    • Date: July 2017