Browse By Collection | Library Digital Collections

Collection

Data from: NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation

This collection contains trajectory and molecular dynamics simulation output data for NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation.
Date: 2022-01-01 to 2024-04-01

Collection

Data from: North American Monsoon Impacts Southern California’s Coastal Low Clouds

This collection contains data from "North American Monsoon Impacts Southern California’s Coastal Low Clouds" (Clemesha et al. 2023). Data files include: satellite-derived Coastal Low Cloudiness (CLC) for May - September 1996 - 2020, seasonal cycle fit of CLC used to create daily anomalies, San Diego airport cloud cover, precipitable water content from 850 to 300 hPa from observations in southern and northern California, a previously published single column model radiative scheme with input and outputs files used in this study.
Date: May through September, 1996 to 2020

Collection

Data from: Observations and Modeling of Ocean Circulation in the Seychelles Plateau Region

This collection contains raw and processed data from a variety of velocity, pressure, temperature and salinity sensors deployed from December 2016 to March 2019 over the Seychelles Plateau and a subset of an Ocean General Circulation POP model from the South Tropical Indian Ocean.
Date: Data: 2015 to 2019; Model: 1993 to 2009

Collection

Data from: Observations and Numerical Simulations of the Onset and Growth of Langmuir Circulations

This collection contains data from observations and numerical simulations of Langmuir circulations, along with the relevant routines to generate figures in Andriatis et al. 2024.
Date: 2020-11-04 to 2020-11-25

Collection

Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
Date: 2015-09-18 to 2015-09-20

Collection

Data from: Observations of strongly modulated surface wave and wave breaking statistics at a submesoscale front

This collection contains data presented in Vrecica et al 2021, including an overview of a submesoscale front, wave statistics, and wave breaking statistics.
Date: 2018-04-17

Collection

Data from: Observations of surface cobbles at two southern California beaches

Beach elevations were surveyed quarterly between January 2008 and July 2018 on cross-shore transects from the back beach to about 8 m water depth using GPS equipped vehicles.
Date: 2008 to 2018

Collection

Data from: Observations of Surface Gravity Wave Spectra from Moving Platforms

This collection consists of ocean and atmospheric observations (e.g., waves and winds) collected off the coast of San Diego and San Francisco California from instrumented Boeing Liquid Robotics SV3 Wave Gliders.
Date: 2020-09-01 to 2021-11-04

Collection

Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
Date: 2015-01 to 2015-03

Collection

Data from: Ocean Surface Salinity Response to Atmospheric River Precipitation in the California Current System

Oceanic and atmospheric measurements, reanalysis and modeled outputs in the California Current System.
Date: 1992 to 2019

Collection

Data from: Overcrowded Housing Reduces COVID-19 Mitigation Measures and Lowers Emotional Health Among San Diego Refugees from September to November of 2020

Data for the present cross-sectional study were collected between September 2020 and November 2020 as part of PANA’s biannual community survey to address the primary research question: What is the association between housing and COVID-19 vulnerability?
Date: 2020-09 to 2020-11

Collection

Data from: Plankton energy flows using a global size-structured and trait-based model

This collection includes a global 20 year (1990-2009) climatology of diagnostic and prognostic variables for the Size-based Plankton Ecological TRAits (MARBL-SPECTRA) model.
Date: 1990 to 2009

Collection

Data from: Prediction of Threonine-Tyrosine Kinase Receptor-Ligand Unbinding Kinetics with Multiscale Milestoning and Metadynamics

Heat shock protein 90 (HSP90) and threonine tyrosine kinase (TTK) simulation enabled estimation of kinetic rates (SEEKR) calculations using both steered molecular dynamics and metadynamics.
Date: 2022-05 to 2024-06

Collection

Data from: QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations

The data set contains the files necessary to recalculate/reproduce the unbinding rates of ligands for the model host-guest systems and Hsp90-inhibitor complexes in the paper "QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations."
Date: 2021 to 2023

Collection

Data from: Quantifying Bioluminescent Light Intensity in Breaking Waves using Numerical Simulations

This collection features velocity, volume fraction, and velocity gradient data interpolated onto a uniform Cartesian grid, along with Basilisk code for simulating breaking waves and Julia code for simulating bioluminescence.
Date: 2024

Collection

Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
Date: 2015-03 to 2018-09

Collection

Data from: Quantitative regional observations of the geological influence on primary sandy beaches

The dataset includes mapped beach elevations, and gravel/bedrock locations in GeoTIFF format.
Date: 2017-10-01 to 2021-03-31

Collection

Data from: Readily Available Primary Aminoboranes as Powerful Reagents for Aldimine Synthesis

Date: 2017 to 2018

Collection

Data from Scripps Research Expeditions 1953-2005

Data and documents from Scripps Institution of Oceanography research vessel expeditions from 1953-2005, including geophysical, water column, and sea surface measurements.
Date: 1953 to 2005

Collection

Data from: Seasonal cycle and annual reversal of the Somali Current in an eddy-resolving global ocean model

The dataset includes a subset of model output from a global 0.1-deg CORE-II forced POP simulation near the region of the Arabian Sea, supporting the Journal of Geophysical Research: Oceans article with the same name.
Date: 2005 to 2009

Collection

Data from: SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine

This data set contains the files necessary to recreate the results in the paper "SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine".
Date: 2020-08 to 2022-03

Collection

Data from: Selectivity and ranking of tight-binding JAK-STAT inhibitors using Markovian milestoning with Voronoi tessellations

The data contains the Simulation Enabled Estimation of Kinetic Rates (SEEKR) simulations for the JAK2 and JAK3-ligand complexes with instructions to compute the residence times of the ligands in these complexes.
Date: 2020 to 2022

Collection

Data from: Sensitivities of the West Greenland Current to Greenland Ice Sheet Meltwater in a Mesoscale Ocean/Sea Ice Model

Diagnostics from a high-resolution global coupled ocean/sea-ice (POP/CICE5) simulations. Diagnostics are calculated based on 1992-1993 for three meltwater forcing experiments: a control run, surface forcing, and spread forcing.
Date: Model creation: 2016 to 2023. Model representation: 1992 to 1993

Collection

Data from: Short-term variability of atmospheric helium revealed through a cryo-enrichment method

He/N2 observations from Scripps Pier and supplementary O2/N2, Ar/N2 and CO2 data.
Date: 2022-04-23 to 2022-05-25

Collection

Data from: Soft robotic steerable micro-catheter for the endovascular treatment of cerebral disorders

Results of analysis and experiment on steerable microcatheters and microguidewires, including video and raw data.
Date: 2017-01-01 to 2021-06-30

Collection

Data from: Southern California Coastal Response to the 2015-16 El Niño

Airborne lidar datasets collected on 6-October-2015 and 22-March-2016, and processed into 1-m resolution digital elevation models.
Date: 2015 to 2016

Collection

Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

This collection includes the remote sensing dataset recorded at Çatalhöyük, Turkey, between 2012-2017. The deterioration of earthen architecture through time was assessed by comparing these 3-D data and with geo spatial methods.
Date: 2012 to 2017

Collection

Data from: Structural basis for ligand modulation of the CCR2 conformational landscape

This collection contains the molecular dynamics trajectories and analysis scripts used in the paper “Structural basis for ligand modulation of the CCR2 conformational landscape”.
Date: 2017 to 2018

Collection

Data from: Subaerial Profiles at Two Beaches: Equilibrium and Machine Learning

This collection contains observations of beach elevation and model derived wave statistics from two locations in San Diego County: Torrey Pines State Beach and Black’s Beach (La Jolla, CA).
Date: 2015-01 to 2023-12

Collection

Data from: Superconductivity Found in Meteorites

This data details the discovery and analysis of superconducting material in two meteorites. These are the first superconducting materials found in extraterrestrial samples and the superconducting phases are characterized as alloys of lead, tin and indium.
Date: 2016 to 2019

Collection

Data from: Technical Note: Stability of tris pH buffer in artificial seawater stored in bags

pH and total dissolved inorganic carbon measurements from tris buffer in artificial seawater stored in gas impermeable bags.
Date: 2018-05-24 to 2019-12-20

Collection

Data from: The Agricultural Productivity Gap

Dataset contains data by country for about 150 countries on GDP per capita, employment share in agriculture, value added share in agriculture, agricultural productivity gap, average hours worked, years of schooling, and human capital.
Date: 1988 to 2011

Collection

Data from: The Impact of Job Training on Temporary Worker Performance: Field Experimental Evidence from Insurance Sales Agents

Data and Stata script used to generate the analysis presented in "The Impact of Job Training on Temporary Worker Performance: Field Experimental Evidence from Insurance Sales Agents."
Date: 2015-01-01 to 2016-02-29

Collection

Data from: The influence of a cross-reef channel on the wave-driven setup and circulation at Ipan, Guam

Currents, waves and water level observations from a shallow and wide shore-attached fringing reef at Ipan, Guam collected over a seven-week study period.
Date: 2011 to 2012

Collection

Data from: The Influence of Cloudiness on Hydrologic Fluctuations in the Mountains of the Western United States

Daily cloud cover indices derived from 4x4 km GOES visible albedo product for snow pillow sites and stream gauges in the mountains of the western U.S.
Date: 1996-01-01 to 2015-12-31

Collection

Data from: The influence of C(sp3)H-Selenium Interactions on the 77Se NMR Quantification of the π-Accepting Properties of Carbenes

The frequency and population analysis results for several 5- and 6-membered carbenes. Structures are unsimplified from those used experimentally.
Date: 2020-02 to 2020-07

Collection

Data from: The Oceanic Barrier Layer in the Eastern Indian Ocean as a Predictor for Rainfall over Indonesia and Australia

This collection consists of E3SMv0 model and variety of observational data and scripts in support of relevant manuscript focused on the relationship of the barrier layer in a region West of Sumatra and the terrestrial rainfall over Indonesia and Australia.
Date: 2018 to 2020

Collection

Data from: The relations between sleep, time of physical activity, and time outdoors among adult women

Exploring the relation between physical activity, time spent outdoors and sleep quality and duration.
Date: 2012-10-10 to 2014-01-13

Collection

Data from: The Seasonal Cycle of Significant Wave Height in the Ocean: Local Versus Remote Forcing

This collection consists of NetCDF files that contain intermediate products derived from observer and modelled data produced by the French Research Institute for Exploitation of the Sea (IFREMER) and Remote Sensing Systems, corresponding to analysis by Colosi et al. (2021).
Date: 1993-01-01 to 2016-12-31

Collection

Data from: Toward Enhanced Reusability: A Comparative Analysis of Metadata for Machine Learning Objects and Their Characteristics in Generalist and Specialist Repositories

This dataset contains data reported in the paper, Labou et al. 2023, which aims to understand how researchers are currently documenting machine learning (ML) research outputs for sharing, and the extent to which repository metadata fields enable reuse of ML objects.
Date: 2021 to 2023

Collection

Data from: Toward probabilistic post-fire debris-flow hazard decision support

For a Southern CA domain, from a 24-hour lead time forecast using the WRF model, on a 1-km grid for 100 ensemble members: 5-minute precipitation output for 12 UTC 8 Jan. 2018 to 12 UTC 10 Jan. 2018 and 12 UTC 1 Feb. 2019 to 12 UTC 3 Feb. 2019.
Date: 2022-01-01 to 2022-02-28

Collection

Data from: Towards Implementing AI Post-processing in Weather and Climate: Proposed Actions from the Oxford 2019 Workshop

We present an open-access experimental testbed database of clean weather and climate data on which traditional methods have been implemented, in order to set benchmarking points for the rapid development of new machine learning methods.
Date: 2018 to 2020

Collection

Data from: Trade-offs in motivating volunteer effort: Experimental evidence on voluntary contributions to science

Data used in the analysis reported in "Trade-offs in motivating volunteer effort: Experimental evidence on voluntary contributions to science" (Lyons & Zhang, 2019).
Date: 2017-06 to 2017-08

Collection

Data from: Unexpected failure of regional marine cloud brightening in a warmer world

Marine cloud brightening simulation output generated using the Community Earth System Model (CESM) version 2.2 described in Wan et al., (submitted).
Date: 2022-04 to 2023-04

Collection

Data from: Urbanization-induced habitat fragmentation erodes multiple components of temporal diversity in a Southern California native bee assemblage

A dataset of bees and plants in coastal sage scrub reserves and habitat fragments in coastal San Diego County, collected by PhD student Keng-Lou James Hung in 2011 and 2012.
Date: 2011-04-12 to 2012-08-13

Collection

Data from: Using a Lagrangian particle tracking model to evaluate impacts of El Niño-related advection on euphausiids in the southern California Current System

These supplemental animations depict particle backtracks for six euphausiid species sampled in the southern California Current System in spring, 2008-2017. The particle model runs four months backward to determine winter water mass origins.
Date: 2007-11-01 to 2017-03-31

Collection

Data from: Validation of geodetic seafloor benchmark stability using structure-from-motion and seafloor pressure data

Data used to validate structure-from-motion underwater as a potential geodetic site imaging tool by confirming 3D modeled measurements with well-constrained heights determined from pressure measurements.
Date: 2017-09-06

Collection

Data from: Wave-Current Interactions at Meso and Submesoscales: Insights from Idealized Numerical Simulations

This collection contains output from idealized simulations of wave-current interactions produced using the wave model WAVEWATCH III and analyzed by Villas Bôas et al. (2020) [doi:10.1175/JPO-D-20-0151.1]. The data can be used in conjunction with the open-source code [https://github.com/biavillasboas/IdealizedWaveCurrent] to reproduce all figures in the paper.
Date: 2019 to 2020

Collection

Data from: Wave-tide interaction for a strongly modulated wave field

This collection contains the data sets and code required to generate each figure presented in the publication Ho, A., Merrifield, S. M., and Pizzo, N. (2022). Wave-tide interaction for a strongly modulated wave field. Journal of Physical Oceanography.
Date: 2020-08-01 to 2021-08-01

Collection

Data from: 'Whale Wave': shifting strategies structure the complex use of critical fjord habitat by humpbacks

This collection contains the data, R programming files, and detailed protocols for various aspects of analysis for the publication: Keen et al. 2016. "Whale Wave": shifting strategies structure the complex use of critical fjord habitat by humpbacks.
Date: 2005 to 2015

Refine your search

Browse by Collection: UCSD Research Data Collections

Search Results