Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Collection

    Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

    • This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
    • Date: 2015-03 to 2018-09
  2. Collection

    Exploring Earth by Scientific Ocean Drilling: 2050 Science Framework

    • The "2050 Science Framework: Exploring Earth by Scientific Ocean Drilling" guides scientists on important research frontiers to pursue to increase understanding of the Earth system while addressing natural and human-caused issues facing society.
    • Date: 2020
  3. Collection

    Data from: Wave-Current Interactions at Meso and Submesoscales: Insights from Idealized Numerical Simulations

    • This collection contains output from idealized simulations of wave-current interactions produced using the wave model WAVEWATCH III and analyzed by Villas Bôas et al. (2020) [doi:10.1175/JPO-D-20-0151.1]. The data can be used in conjunction with the open-source code [https://github.com/biavillasboas/IdealizedWaveCurrent] to reproduce all figures in the paper.
    • Date: 2019 to 2020
  4. Collection

    Observations and Model Simulations from the Inner-Shelf Dynamics Experiment (ISDE)

    • In-situ observations and model simulations from the Inner-Shelf Dynamics Experiment (ISDE)
    • Date: August 2017 to December 2017
  5. Collection

    CLIvar and MOde water Dynamics Experiment (CLIMODE) and Antarctic Intermediate Water (AAIW) Float Data Archive

    • Calibrated and uncalibrated data from 12 Argo-equivalent, Webb Research ApexSBE profiling floats in the North Atlantic's Eighteen Degree Water region (CLIMODE), and southeast Pacific’s Subantarctic Mode Water region. Sensors: pressure, temperature, salinity, and Aanderaa optode oxygen.
    • Date: 2005-11-10 to 2008-05-21
  6. Collection

    STXM-NEXAFS Measurements of Atmospheric Aerosol Particles from the Southern Ocean Clouds, Radiation, Aerosol Transport Experimental Study (SOCRATES) in January-February 2018

    • Airborne and shipboard measurements of organic composition during the Southern Ocean Clouds, Radiation, Aerosol Transport Experimental Study (SOCRATES) in January-February 2018 provide organic functional groups by scanning transmission X-ray microscope (STXM) with near edge X-ray absorption fine structure (NEXAFS) for particles 0.25 – 1.75 µm diameter.
    • Date: 2018-01-15 to 2018-02-26
  7. Collection

    Data from: Absolute Templating of M(111) Cluster Surrogates by Galvanic Exchange

    • Density Functional Theory Methods were used to calculate several carbene coinage metal clusters and their intermediates in a galvanic exchange process. Also, these methods calculated NICS scan, and WFN method for ELF.
    • Date: 2019 to 2020
  8. Collection

    Data from: The influence of C(sp3)H-Selenium Interactions on the 77Se NMR Quantification of the π-Accepting Properties of Carbenes

    • The frequency and population analysis results for several 5- and 6-membered carbenes. Structures are unsimplified from those used experimentally.
    • Date: 2020-02 to 2020-07
  9. Collection

    Data from: Four Atmospheric Circulation Regimes Over the North Pacific and Their Relationship to California Precipitation on Daily to Seasonal Timescales

    • This dataset contains four indices of daily atmospheric variability associated with four circulation regimes over the North Pacific, which have been identified as essential drivers of atmospheric river landfall variability and California precipitation.
    • Date: 2018
  10. Collection

    Digital Media Lab

    • This collection includes a range of 3D media projects created by the UC San Diego Library Digital Media Lab.
    • Date: 2020-01-02
  11. Collection

    Autonomous Underwater Vehicle (AUV)-borne velocity measurements collected over a fringing coral reef near Makua Beach, Oahu, Hawai'i

    • This collection contains raw data from a REMUS-100 Autonomous Underwater Vehicle (AUV) deployed in September 2013 over a fringing coral reef near Makua Beach, Oahu, Hawai'i.
    • Date: 2013-09-06 to 2013-09-08
  12. Collection

    Data from: Observations and Modeling of Ocean Circulation in the Seychelles Plateau Region

    • This collection contains raw and processed data from a variety of velocity, pressure, temperature and salinity sensors deployed from December 2016 to March 2019 over the Seychelles Plateau and a subset of an Ocean General Circulation POP model from the South Tropical Indian Ocean.
    • Date: Data: 2015 to 2019; Model: 1993 to 2009
  13. Collection

    Data from: Cusp and mega cusp observations on a mixed sediment beach

    • The dataset contains elevation rasters and gravel/cobble locations (North American Datum of 1983 (NAD 83), North American Vertical Datum of 1988 (NAVD 88)).
    • Date: 2018 to 2019
  14. Collection

    Data from: The influence of a cross-reef channel on the wave-driven setup and circulation at Ipan, Guam

    • Currents, waves and water level observations from a shallow and wide shore-attached fringing reef at Ipan, Guam collected over a seven-week study period.
    • Date: 2011 to 2012
  15. Collection

    Atmospheric Aerosol Submicron Particle Composition including Organic Functional Group Concentrations at Arctic Locations

    • This collection includes separate data sets of atmospheric aerosol submicron particle composition that include organic functional group concentrations at locations within the Arctic.
    • Date: 2008 to 2014
  16. Collection

    Data from: Ice break-up controls dissipation of wind-waves across Southern Ocean sea ice

    • In situ wave observations and WaveWatch III model output for Ardhuin et al. (2020).
    • Date: 2018-05 to 2018-07
  17. Collection

    EarthCube Organization Materials

    • This collection of materials managed by the EarthCube Coordination Office includes organizational and governance documents, white papers, presentations, reports, and event proceedings produced by EarthCube leaders, staff, and committee members.
    • Date: 2011 to present
  18. Collection

    Data from: Interannual variations in meltwater input to the Southern Ocean from Antarctic ice shelves

    • Height changes and basal melt rates of Antarctic ice shelves from satellite remote sensing, 1994–2018.
    • Date: 1994 to 2018
  19. Collection

    Data from: Towards Implementing AI Post-processing in Weather and Climate: Proposed Actions from the Oxford 2019 Workshop

    • We present an open-access experimental testbed database of clean weather and climate data on which traditional methods have been implemented, in order to set benchmarking points for the rapid development of new machine learning methods.
    • Date: 2018 to 2020
  20. Collection

    The Atmospheric River-CONNected objECT (AR-CONNECT) algorithm applied to the National Aeronautics and Space Administration (NASA) Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA V2) - 1983 to 2016

    • The Atmospheric River-CONNected objECT (CONNECT) algorithm is applied to global Integrated Water Vapor Transport (IVT) data from the NASA MERRA-2 reanalysis product for the period 1983 to 2016.
    • Date: 2019 to 2020
  21. Collection

    Transient Rip-currents on the Stratified Inner-shelf

    • Transient Rip-currents (TRCs) are an important coastal phenomenon, driving cross-shore surf-zone and inner-shelf exchange. Archived herein are idealized numerical simulation output used to evaluate TRC effects on the stratified inner-shelf.
    • Date: 2019 to 2020
  22. Collection

    Data from: DNA damage induced during mitosis undergoes DNA repair synthesis

    • A study of the DNA repair response to laser-induced DNA damage in selected mitotic chromosomes.
    • Date: 2010 to 2019
  23. Collection

    Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

    • Flat composite panel impacts and residual strength testing. Impact damage characterized by X-ray computed tomography and ultrasonic scanning and residual strength testing characterized by digital image correlation.
    • Date: 2017-07 to 2017-09
  24. Collection

    Spherical Sound Search

    • Video and audio recordings of virtual reality concerto, mixed reality minuet, and augmented reality rock performances from a concert that presented Extended Reality (XR) musical instrument research.
    • Date: 2020-01 to 2020-02
  25. Collection

    Data from: Influence of Carbene and Phosphine Ligands on the Catalytic Activity of Gold Complexes in the Hydroamination and Hydrohydrazination of Alkynes

    • Several carbene structures and reaction intermediates for the Au catalyzed hydroamination of alkynes were calculated with Density Functional Theory Methods.
    • Date: 2019 to 2020
  26. Collection

    Hydrographic Doppler Sonar System (HDSS): Acoustic ocean current profiling data from the R/V Revelle

    • The Hydrographic Doppler Sonar System on the R/V Revelle provides profiles of absolute ocean current and acoustic scattering strength in support of scientific operations with 50kHz & 140kHz sonars capable of sampling between 20m and 700–1100m and between 20m and 150–350m, respectively.
    • Date: 2006 to 2017
  27. Collection

    Data from: Superconductivity Found in Meteorites

    • This data details the discovery and analysis of superconducting material in two meteorites. These are the first superconducting materials found in extraterrestrial samples and the superconducting phases are characterized as alloys of lead, tin and indium.
    • Date: 2016 to 2019
  28. Collection

    Lawrence Livermore National Laboratory (LLNL) Open Data Initiative

    • Lawrence Livermore National Laboratory’s Data Science Institute shares some of LLNL’s challenging and unique data sets with the larger data science community through its Open Data Initiative.
    • Date: July 2015 to present
  29. Collection

    Data from: Contrasting Local and Long-Range-Transported Warm Ice-Nucleating Particles During an Atmospheric River in Coastal California, USA

    • Data, modeling results and analyses supporting research into meteorology and ice nucleating particles.
    • Date: 2016-03-05 to 2018-05-01
  30. Collection

    Data from: Trade-offs in motivating volunteer effort: Experimental evidence on voluntary contributions to science

    • Data used in the analysis reported in "Trade-offs in motivating volunteer effort: Experimental evidence on voluntary contributions to science" (Lyons & Zhang, 2019).
    • Date: 2017-06 to 2017-08
  31. Collection

    MITgcm 3-daily global sea surface temperature, ocean currents, nitrate and phytoplankton biomass (1992 - 2016)

    • 3-daily averaged sea surface temperature, ocean currents (u, v), nitrate and phytoplankton biomass for the 35 types in the top 10m of the model. Model output has been interpolated from the natural grid onto 1/5th degree resolution.
    • Date: May 2016
  32. Collection

    Data from: Observations of surface cobbles at two southern California beaches

    • Beach elevations were surveyed quarterly between January 2008 and July 2018 on cross-shore transects from the back beach to about 8 m water depth using GPS equipped vehicles.
    • Date: 2008 to 2018
  33. Collection

    Data from: The Impact of Job Training on Temporary Worker Performance: Field Experimental Evidence from Insurance Sales Agents

    • Data and Stata script used to generate the analysis presented in "The Impact of Job Training on Temporary Worker Performance: Field Experimental Evidence from Insurance Sales Agents."
    • Date: 2015-01-01 to 2016-02-29
  34. Collection

    Data from: Mesopelagic fishes dominate otolith record of past two millennia in the Santa Barbara Basin

    • Two data files for Santa Barbara Basin, (1) individual fossil otolith data (geometric measurements, shape characteristics and elemental composition); (2) time series of otolith deposition rate and climate proxies.
    • Date: 1993 to 2015
  35. Collection

    Data from: A Glimpse through Time and Space: Visualizing Spatial Continuity and History-making at Çatalhöyük, Turkey

    • This collection includes 3-D models, derived 3-D renders, Unity 3D asset packages, a Win64 3-D app, and related metadata that reconstruct both spatially and temporally (4-D) the ‘Shrine’ 10 sequence at the Neolithic site of Çatalhöyük, Turkey
    • Date: 2017 to 2019
  36. Collection

    Data from: Validation of geodetic seafloor benchmark stability using structure-from-motion and seafloor pressure data

    • Data used to validate structure-from-motion underwater as a potential geodetic site imaging tool by confirming 3D modeled measurements with well-constrained heights determined from pressure measurements.
    • Date: 2017-09-06
  37. Collection

    Solomon Sea SPICE Mooring Data

    • Moorings were deployed in the Solomon Sea outflow channels to measure water velocity, temperature, and salinity as a part of an international experiment to observe and monitor the ocean circulation of the southwest Pacific Ocean.
    • Date: 2012-07-15 to 2015-08-16
  38. Collection

    Data Science & Engineering Master of Advanced Study (DSE MAS) Capstone Projects

    • This collection contains the capstone projects for the Data Science & Engineering (DSE) Master of Advanced Study (MAS) program at UC San Diego.
    • Date: 2019 to present
  39. Collection

    Data from: Implications of Byproduct Chemistry in Nanoparticle Synthesis

    • Absorption spectra of organic byproducts of tetrachloroaurate reduction by 2-(N-morpholino)ethanesulfonate (MES) were calculated via time-dependent density functional theory. These include small organic molecules, organic MES oligomers, and Au(I) complexes.
    • Date: 2016 to 2018
  40. Collection

    Integrated Vapor Transport Forecast Models, Reanalysis, and Postprocessing Machine Learning Models for the North American West Coast [2008-2017]

    • Integrated Vapor Transport (IVT) for the GFS forecast model and the MERRA2 reanalysis for the North American West Coast and Eastern Pacific. Additionally, this dataset contains the convolutional neural networks used to post-process this forecast.
    • Date: 2018-01-11 to 2018-04-13
  41. Collection

    EarthCube User Scenario Collection

    • A collection of earth scientists' descriptions of their cyberinfrastructure needs, developed for the NSF EarthCube program.
    • Date: 2015-05-01 to 2016-09-01
  42. Collection

    Scripps-KAUST Regional Integrated Prediction System (SKRIPS)

    • A regional coupled ocean–atmosphere model (based on MITgm, WRF, and ESMF) to study air--sea feedbacks.
    • Date: 2019
  43. Collection

    Data from: Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking

    • All structures and RMSDs used in Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking are provided here.
    • Date: 2017 to 2018
  44. Collection

    Data from: Increasing STEM Undergraduate Participation in Innovative Activities: Field Experimental Evidence

    • Measures of performance on an innovation contest by whether or not participants receive randomized encouragement, and whether participants self-selected into the contest or joined after receiving a monetary inducement for doing so.
    • Date: 2017-01 to 2017-07
  45. Collection

    Plant-pollinator interaction networks in coastal sage scrub reserves and fragments in San Diego

    • Data here describe the interactions between plants and putative pollinators in large natural reserves (area > 500 ha; n = 6) and small habitat fragments (area < 60 ha; n = 6) of coastal sage scrub habitat.
    • Date: 2015 to 2016
  46. Collection

    Scripps O2 Program Data

    • The Scripps O2 Program website at https://scrippso2.ucsd.edu provides access to openly available atmospheric O2/N2 ratio and CO2 concentration data from various sources along with graphics. Redundant copies of the atmospheric O2/N2 and CO2 data from 12 sampling stations are being deposited here, through the UC San Diego Library, to provide enhanced discovery, long-term accessibility, and preservation. The latest data archives from the 10 active stations are added to this collection as they become available.
    • Date: 1989 to present
  47. Collection

    Data from Scripps Research Expeditions 1953-2005

    • Data and documents from Scripps Institution of Oceanography research vessel expeditions from 1953-2005, including geophysical, water column, and sea surface measurements.
    • Date: 1953 to 2005
  48. Collection

    California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic Fisheries Data (2017- )

    • Non-calibrated multi-frequency acoustic fisheries data (.raw files) collected aboard RV Sally Ride on the November 2017 CalCOFI (California Cooperative Fisheries Investigations) cruise
    • Date: 2017-11-09 to 2017-11-24
  49. Collection

    Data from: Seasonal cycle and annual reversal of the Somali Current in an eddy-resolving global ocean model

    • The dataset includes a subset of model output from a global 0.1-deg CORE-II forced POP simulation near the region of the Arabian Sea, supporting the Journal of Geophysical Research: Oceans article with the same name.
    • Date: 2005 to 2009
  50. Collection

    Data from: Southern California Coastal Response to the 2015-16 El Niño

    • Airborne lidar datasets collected on 6-October-2015 and 22-March-2016, and processed into 1-m resolution digital elevation models.
    • Date: 2015 to 2016