Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Collection

    Data from: Instrumented Wave Gliders for Air-Sea Interaction and Upper Ocean Research

    • This collection regroups data sets collected during four major field programs from 2013 to 2020 from a fleet of Wave Gliders specifically designed and instrumented for air-sea interaction and upper ocean observations by the Air-Sea Interaction Laboratory at Scripps Institution of Oceanography.
    • Date: 2013 to 2020
  2. Collection

    SeaFET & SeapHOx

    • Documentation for SeaFET and SeapHOx oceanographic sensors.
    • Date: 2008 to 2021
  3. Collection

    Western Pacific Atmospheric River Object Data from MODE detection software using West-WRF, GEFS, and MERRA-2

    • The collection contains NetCDF files of atmospheric river objects as processed through the Method for Object-based Diagnostic Evaluation software.
    • Date: 2006-12 to 2017-03
  4. Collection

    Data from: Soft robotic steerable micro-catheter for the endovascular treatment of cerebral disorders

    • Results of analysis and experiment on steerable microcatheters and microguidewires, including video and raw data.
    • Date: 2017-01-01 to 2021-06-30
  5. Collection

    The Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study

    • Observational data and analysis from the NSF-funded Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study.
    • Date: 2015
  6. Collection

    Scripps Ecological Observatory

    • Flow cytometry and dissolved gas data (oxygen and argon) collected at the Ellen Browning Scripps Pier.
    • Date: 2019 to present
  7. Collection

    Data from: Cyclic(Alkyl)(Amino)Carbene Ligands Enable Cu-Catalyzed Markovnikov Protoboration and Protosilylation of Terminal Alkynes: A Versatile Portal to Functionalized Alkenes

    • Included are the Gaussian output files (.chk, .fchk, and .log) from DFT calculations on the free carbenes explored in the protoboration and protosilylation of alkynes.
    • Date: 2020 to 2021
  8. Collection

    Data from: The Oceanic Barrier Layer in the Eastern Indian Ocean as a Predictor for Rainfall over Indonesia and Australia

    • This collection consists of E3SMv0 model and variety of observational data and scripts in support of relevant manuscript focused on the relationship of the barrier layer in a region West of Sumatra and the terrestrial rainfall over Indonesia and Australia.
    • Date: 2018 to 2020
  9. Collection

    Data from: Observations of strongly modulated surface wave and wave breaking statistics at a submesoscale front

    • This collection contains data presented in Vrecica et al 2021, including an overview of a submesoscale front, wave statistics, and wave breaking statistics.
    • Date: 2018-04-17
  10. Collection

    Data from: Eddy-induced acceleration of Lagrangian floats

    • Simulated Argo float positions computed using velocities from the Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2) project.
    • Date: 2016 to 2019
  11. Collection

    San Diego Supercomputer Center (SDSC) Research Data Services Materials Collection

    • Research Data Services (RDS) division at SDSC provides infrastructure and technical expertise to support data-intensive research for academic and non-academic customers. This collection includes informational and technical work materials developed for the teams’ many projects.
    • Date: 2019 to present
  12. Collection

    Data from: Enhanced surf zone and wave runup observations with hovering drone-mounted LiDAR

    • Drone LiDAR data obtained during the SCaRP field experiment of Winter 2019-2020 at Torrey Pines State Beach in San Diego, California, USA.
    • Date: 2019-12-14 to 2020-02-24
  13. Collection

    Data from: Technical Note: Stability of tris pH buffer in artificial seawater stored in bags

    • pH and total dissolved inorganic carbon measurements from tris buffer in artificial seawater stored in gas impermeable bags.
    • Date: 2018-05-24 to 2019-12-20
  14. Collection

    Cell Image Library

    • This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. The purpose of this database is to advance research on cellular activity, with the ultimate goal of improving human health.
    • Date: 2010-08-09 to present
  15. Collection

    Daily POP Model Output over the Equatorial Indian Ocean

    • Daily POP Model output (2005-2009) extracted over the equatorial Indian Ocean.
    • Date: 2005 to 2009
  16. Collection

    Data from: Internal tide structure and temporal variability on the reflective continental slope of southeastern Tasmania

    • This collection contains in situ data (from 3 moorings and 1 CTD/LADCP station) from the Tasman Tidal Dissipation Experiment (T-TIDE) that was analyzed in Marques et al. (2020).
    • Date: From 2015-01 to 2015-03
  17. Collection

    Native bees in San Diego's coastal sage scrub reserves and fragments, surveyed in 2015 and 2016

    • A dataset of bees and plants in coastal sage scrub reserves and habitat fragments in coastal San Diego County, collected by PhD student Keng-Lou James Hung in 2015 and 2016.
    • Date: 2015 to 2016
  18. Collection

    Data from: Feasibility of continuous fever monitoring using wearable devices

    • Sixty-five continuous days of data at one-minute resolution covering fifty individuals reporting COVID-19 infections starting on day 45 in the data set.
    • Date: 2020-03 to 2020-06
  19. Collection

    Data from: Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase

    • The input and output Brownian dynamics trajectories associated with this study.
    • Date: 2017 to 2020
  20. Collection

    Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

    • This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
    • Date: 2015-03 to 2018-09
  21. Collection

    Exploring Earth by Scientific Ocean Drilling: 2050 Science Framework

    • The "2050 Science Framework: Exploring Earth by Scientific Ocean Drilling" guides scientists on important research frontiers to pursue to increase understanding of the Earth system while addressing natural and human-caused issues facing society.
    • Date: 2020
  22. Collection

    Data from: Wave-Current Interactions at Meso and Submesoscales: Insights from Idealized Numerical Simulations

    • This collection contains output from idealized simulations of wave-current interactions produced using the wave model WAVEWATCH III and analyzed by Villas Bôas et al. (2020) [doi:10.1175/JPO-D-20-0151.1]. The data can be used in conjunction with the open-source code [https://github.com/biavillasboas/IdealizedWaveCurrent] to reproduce all figures in the paper.
    • Date: 2019 to 2020
  23. Collection

    Observations and Model Simulations from the Inner-Shelf Dynamics Experiment (ISDE)

    • In-situ observations and model simulations from the Inner-Shelf Dynamics Experiment (ISDE)
    • Date: August 2017 to December 2017
  24. Collection

    CLIvar and MOde water Dynamics Experiment (CLIMODE) and Antarctic Intermediate Water (AAIW) Float Data Archive

    • Calibrated and uncalibrated data from 12 Argo-equivalent, Webb Research ApexSBE profiling floats in the North Atlantic's Eighteen Degree Water region (CLIMODE), and southeast Pacific’s Subantarctic Mode Water region. Sensors: pressure, temperature, salinity, and Aanderaa optode oxygen.
    • Date: 2005-11-10 to 2008-05-21
  25. Collection

    STXM-NEXAFS Measurements of Atmospheric Aerosol Particles from the Southern Ocean Clouds, Radiation, Aerosol Transport Experimental Study (SOCRATES) in January-February 2018

    • Airborne and shipboard measurements of organic composition during the Southern Ocean Clouds, Radiation, Aerosol Transport Experimental Study (SOCRATES) in January-February 2018 provide organic functional groups by scanning transmission X-ray microscope (STXM) with near edge X-ray absorption fine structure (NEXAFS) for particles 0.25 – 1.75 µm diameter.
    • Date: 2018-01-15 to 2018-02-26
  26. Collection

    Data from: Absolute Templating of M(111) Cluster Surrogates by Galvanic Exchange

    • Density Functional Theory Methods were used to calculate several carbene coinage metal clusters and their intermediates in a galvanic exchange process. Also, these methods calculated NICS scan, and WFN method for ELF.
    • Date: 2019 to 2020
  27. Collection

    Data from: The influence of C(sp3)H-Selenium Interactions on the 77Se NMR Quantification of the π-Accepting Properties of Carbenes

    • The frequency and population analysis results for several 5- and 6-membered carbenes. Structures are unsimplified from those used experimentally.
    • Date: 2020-02 to 2020-07
  28. Collection

    Data from: Four Atmospheric Circulation Regimes Over the North Pacific and Their Relationship to California Precipitation on Daily to Seasonal Timescales

    • This dataset contains four indices of daily atmospheric variability associated with four circulation regimes over the North Pacific, which have been identified as essential drivers of atmospheric river landfall variability and California precipitation.
    • Date: 2018
  29. Collection

    Digital Media Lab

    • This collection includes a range of 3D media projects created by the UC San Diego Library Digital Media Lab.
    • Date: 2020-01-02
  30. Collection

    Autonomous Underwater Vehicle (AUV)-borne velocity measurements collected over a fringing coral reef near Makua Beach, Oahu, Hawai'i

    • This collection contains raw data from a REMUS-100 Autonomous Underwater Vehicle (AUV) deployed in September 2013 over a fringing coral reef near Makua Beach, Oahu, Hawai'i.
    • Date: 2013-09-06 to 2013-09-08
  31. Collection

    Data from: Observations and Modeling of Ocean Circulation in the Seychelles Plateau Region

    • This collection contains raw and processed data from a variety of velocity, pressure, temperature and salinity sensors deployed from December 2016 to March 2019 over the Seychelles Plateau and a subset of an Ocean General Circulation POP model from the South Tropical Indian Ocean.
    • Date: Data: 2015 to 2019; Model: 1993 to 2009
  32. Collection

    Data from: Cusp and mega cusp observations on a mixed sediment beach

    • The dataset contains elevation rasters and gravel/cobble locations (North American Datum of 1983 (NAD 83), North American Vertical Datum of 1988 (NAVD 88)).
    • Date: 2018 to 2019
  33. Collection

    Data from: The influence of a cross-reef channel on the wave-driven setup and circulation at Ipan, Guam

    • Currents, waves and water level observations from a shallow and wide shore-attached fringing reef at Ipan, Guam collected over a seven-week study period.
    • Date: 2011 to 2012
  34. Collection

    Atmospheric Aerosol Submicron Particle Composition including Organic Functional Group Concentrations at Arctic Locations

    • This collection includes separate data sets of atmospheric aerosol submicron particle composition that include organic functional group concentrations at locations within the Arctic.
    • Date: 2008 to 2014
  35. Collection

    Data from: Ice break-up controls dissipation of wind-waves across Southern Ocean sea ice

    • In situ wave observations and WaveWatch III model output for Ardhuin et al. (2020).
    • Date: 2018-05 to 2018-07
  36. Collection

    EarthCube Organization Materials

    • This collection of materials managed by the EarthCube Coordination Office includes organizational and governance documents, white papers, presentations, reports, and event proceedings produced by EarthCube leaders, staff, and committee members.
    • Date: 2011 to present
  37. Collection

    Data from: Interannual variations in meltwater input to the Southern Ocean from Antarctic ice shelves

    • Height changes and basal melt rates of Antarctic ice shelves from satellite remote sensing, 1994–2018.
    • Date: 1994 to 2018
  38. Collection

    Data from: Towards Implementing AI Post-processing in Weather and Climate: Proposed Actions from the Oxford 2019 Workshop

    • We present an open-access experimental testbed database of clean weather and climate data on which traditional methods have been implemented, in order to set benchmarking points for the rapid development of new machine learning methods.
    • Date: 2018 to 2020
  39. Collection

    The Atmospheric River-CONNected objECT (AR-CONNECT) algorithm applied to the National Aeronautics and Space Administration (NASA) Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA V2) - 1983 to 2016

    • The Atmospheric River-CONNected objECT (CONNECT) algorithm is applied to global Integrated Water Vapor Transport (IVT) data from the NASA MERRA-2 reanalysis product for the period 1983 to 2016.
    • Date: 2019 to 2020
  40. Collection

    Transient Rip-currents on the Stratified Inner-shelf

    • Transient Rip-currents (TRCs) are an important coastal phenomenon, driving cross-shore surf-zone and inner-shelf exchange. Archived herein are idealized numerical simulation output used to evaluate TRC effects on the stratified inner-shelf.
    • Date: 2019 to 2020
  41. Collection

    Data from: DNA damage induced during mitosis undergoes DNA repair synthesis

    • A study of the DNA repair response to laser-induced DNA damage in selected mitotic chromosomes.
    • Date: 2010 to 2019
  42. Collection

    Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

    • Flat composite panel impacts and residual strength testing. Impact damage characterized by X-ray computed tomography and ultrasonic scanning and residual strength testing characterized by digital image correlation.
    • Date: 2017-07 to 2017-09
  43. Collection

    Spherical Sound Search

    • Video and audio recordings of virtual reality concerto, mixed reality minuet, and augmented reality rock performances from a concert that presented Extended Reality (XR) musical instrument research.
    • Date: 2020-01 to 2020-02
  44. Collection

    Data from: Influence of Carbene and Phosphine Ligands on the Catalytic Activity of Gold Complexes in the Hydroamination and Hydrohydrazination of Alkynes

    • Several carbene structures and reaction intermediates for the Au catalyzed hydroamination of alkynes were calculated with Density Functional Theory Methods.
    • Date: 2019 to 2020
  45. Collection

    Hydrographic Doppler Sonar System (HDSS): Acoustic ocean current profiling data from the R/V Revelle

    • The Hydrographic Doppler Sonar System on the R/V Revelle provides profiles of absolute ocean current and acoustic scattering strength in support of scientific operations with 50kHz & 140kHz sonars capable of sampling between 20m and 700–1100m and between 20m and 150–350m, respectively.
    • Date: 2006 to 2017
  46. Collection

    Data from: Superconductivity Found in Meteorites

    • This data details the discovery and analysis of superconducting material in two meteorites. These are the first superconducting materials found in extraterrestrial samples and the superconducting phases are characterized as alloys of lead, tin and indium.
    • Date: 2016 to 2019
  47. Collection

    Lawrence Livermore National Laboratory (LLNL) Open Data Initiative

    • Lawrence Livermore National Laboratory’s Data Science Institute shares some of LLNL’s challenging and unique data sets with the larger data science community through its Open Data Initiative.
    • Date: July 2015 to present
  48. Collection

    Data from: Contrasting Local and Long-Range-Transported Warm Ice-Nucleating Particles During an Atmospheric River in Coastal California, USA

    • Data, modeling results and analyses supporting research into meteorology and ice nucleating particles.
    • Date: 2016-03-05 to 2018-05-01
  49. Collection

    Data from: Trade-offs in motivating volunteer effort: Experimental evidence on voluntary contributions to science

    • Data used in the analysis reported in "Trade-offs in motivating volunteer effort: Experimental evidence on voluntary contributions to science" (Lyons & Zhang, 2019).
    • Date: 2017-06 to 2017-08
  50. Collection

    MITgcm 3-daily global sea surface temperature, ocean currents, nitrate and phytoplankton biomass (1992 - 2016)

    • 3-daily averaged sea surface temperature, ocean currents (u, v), nitrate and phytoplankton biomass for the 35 types in the top 10m of the model. Model output has been interpolated from the natural grid onto 1/5th degree resolution.
    • Date: May 2016