Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Collection

    Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization

    • This collection integrates highly accurate 3D snapshots of Bodie's historic buildings before/after disturbance, or post-restoration, and other 3D geospatial data that were used to monitor and digitally preserve important cultural resources at Bodie California State Historic Park.
    • Date: 2015 and 2020
  2. Collection

    Data from: Calibrated absolute seafloor pressure measurements for geodesy in Cascadia

    • Raw and corrected pressure data from campaign-style surveys of absolute calibrated sea pressure using an Absolute Self-Calibrating Pressure Recorder (ASCPR) in the Cascadia subduction zone from 2014 to 2017.
    • Date: 2014 to 2017
  3. Collection

    Data from: Carbon and Oxygen Isotopic Fractionation in the Products of Low-Temperature VUV Photodissociation of Carbon Monoxide

    • Carbon and oxygen isotopic fractionation during photodissociation by VUV photons. This Matlab based model only calculates the isotope effect in the self-shielding process and not by any other means (e.g., predissociation). Data files are included.
    • Date: 2016 to 2018
  4. Collection

    Data from: Carbonic Anhydrases, EPF2 and a Novel Protease Mediate CO2 Control of Stomatal Development

    • RNA-Seq experiments analyzing the Arabidopsis response to low and elevated carbon dioxide growing conditions were conducted to capture early signaling events as seedlings were adapting to stress.
    • Date: 2012 to 2013
  5. Collection

    Data from: Characterizing Non-phase-locked Tidal Currents in the California Current System using High-frequency Radar

    • Processed time series from HFR, power spectra from HFR, and fitted harmonic constituents from analyzed HFR. Data from a bottom pressure sensor used in suppl. Scripts used in the study to analyze and process data and to make visualizations.
    • Date: 2012-01-01 to 2021-04-01
  6. Collection

    Data from: Climate change intensification of horizontal water vapor transport in CMIP5

    • The dataset contains simulations of water vapor transport from 22 CMIP5 models including the historical, RCP4.5, and RCP8.5 runs.
    • Date: 2014 to 2015
  7. Collection

    Data from: Cobble Tracking Observations at Torrey Pines State Beach, CA, USA

    • Wave data and cobble locations at Torrey Pines State Beach, San Diego, California.
    • Date: 2021 to 2023
  8. Collection

    Data from: Commitment Problems or Bidding Wars? Rebel Fragmentation as Peace Building

    • This project uses an original dataset of field commanders in post-civil war Tajikistan to show that warlords from the victorious faction were as likely to be purged from the ruling coalition in a given year as warlords from the defeated faction.
    • Date: 2012
  9. Collection

    Data from: Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking

    • All structures and RMSDs used in Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking are provided here.
    • Date: 2017 to 2018
  10. Collection

    Data from: Contrasting Local and Long-Range-Transported Warm Ice-Nucleating Particles During an Atmospheric River in Coastal California, USA

    • Data, modeling results and analyses supporting research into meteorology and ice nucleating particles.
    • Date: 2016-03-05 to 2018-05-01
  11. Collection

    Data from: Cusp and mega cusp observations on a mixed sediment beach

    • The dataset contains elevation rasters and gravel/cobble locations (North American Datum of 1983 (NAD 83), North American Vertical Datum of 1988 (NAVD 88)).
    • Date: 2018 to 2019
  12. Collection

    Data from: Cyclic(Alkyl)(Amino)Carbene Ligands Enable Cu-Catalyzed Markovnikov Protoboration and Protosilylation of Terminal Alkynes: A Versatile Portal to Functionalized Alkenes

    • Included are the Gaussian output files (.chk, .fchk, and .log) from DFT calculations on the free carbenes explored in the protoboration and protosilylation of alkynes.
    • Date: 2020 to 2021
  13. Collection

    Data from: Diminished efficacy of regional marine cloud brightening in a warmer world

    • Marine cloud brightening simulation output generated using the Community Earth System Model (CESM) version 2.2 described in Wan et al. (accepted).
    • Date: 2022-04 to 2023-12
  14. Collection

    Data from: DNA damage induced during mitosis undergoes DNA repair synthesis

    • A study of the DNA repair response to laser-induced DNA damage in selected mitotic chromosomes.
    • Date: 2010 to 2019
  15. Collection

    Data from: Drift-Corrected Seafloor Vertical Deformation at Axial Seamount 2013-2014

    • Data from a Self-Calibrating Pressure Recorder (SCPR) deployed at Axial Seamount from 2013 to 2015. This is seafloor height change (cm), converted from pressure (kPa), corrected for ocean tides and pressure gauge drift.
    • Date: 2015-08-25
  16. Collection

    Data from: Eddy-induced acceleration of Lagrangian floats

    • Simulated Argo float positions computed using velocities from the Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2) project.
    • Date: 2016 to 2019
  17. Collection

    Data from: Effect of atmospheric forcing resolution on simulated mixed layer depth in the North Pacific

    • This dataset contains daily output from two eddying ocean simulations in the North Pacific. The two experiments have the same configuration except for the atmospheric forcing resolution.
    • Date: 2014 to 2018
  18. Collection

    Data from: Electrostatic interactions as mediators in the allosteric activation of PKA RIalpha

    • Molecular dynamics input files, trajectories and analysis scripts used in the paper "Electrostatic interactions as mediators in the allosteric network of PKA RIalpha".
    • Date: 2015-09-15
  19. Collection

    Data from: Enhanced surf zone and wave runup observations with hovering drone-mounted LiDAR

    • Drone LiDAR data obtained during the SCaRP field experiment of Winter 2019-2020 at Torrey Pines State Beach in San Diego, California, USA.
    • Date: 2019-12-14 to 2020-02-24
  20. Collection

    Data from: Episodic Southern Ocean heat loss and its mixed layer impacts revealed by the furthest south multi-year surface flux mooring

    • This dataset contains Quality Controlled daily mean air-sea heat flux estimates from the NSF Ocean Observatories Initiative Southern Ocean mooring site for the period 2015 to 2017, as used in the analysis of Ogle et al. 2018 (doi:10.1029/2017GL076909)
    • Date: 2015 to 2017
  21. Collection

    Data from: Exploration and Explanation in Computational Notebooks

    • Analysis of approximately 1.25 million Jupyter Notebooks downloaded from public repositories on GitHub in July 2017.
    • Date: July 2017
  22. Collection

    Data from: Feasibility of continuous fever monitoring using wearable devices

    • Sixty-five continuous days of data at one-minute resolution covering fifty individuals reporting COVID-19 infections starting on day 45 in the data set.
    • Date: 2020-03 to 2020-06
  23. Collection

    Data from: Four Atmospheric Circulation Regimes Over the North Pacific and Their Relationship to California Precipitation on Daily to Seasonal Timescales

    • This dataset contains four indices of daily atmospheric variability associated with four circulation regimes over the North Pacific, which have been identified as essential drivers of atmospheric river landfall variability and California precipitation.
    • Date: 2018
  24. Collection

    Data from: Genuine Carbene Versus Carbene-Like Reactivity

    • Optimized geometries, frequencies, and single point calculations for reactants, products, reaction intermediates, and transition states involved in forming cyclic(aryl)(amino)carbene-metal complexes and decomposition products.
    • Date: 2023-04 to 2023-11
  25. Collection

    Data from: Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package

    • Data, functions, and scripts associated with "Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package" (Kachelein et al. 2022).
    • Date: 2010 to 2021
  26. Collection

    Data from: Ice break-up controls dissipation of wind-waves across Southern Ocean sea ice

    • In situ wave observations and WaveWatch III model output for Ardhuin et al. (2020).
    • Date: 2018-05 to 2018-07
  27. Collection

    Data from: Identification of weakly- to strongly-turbulent three-wave processes in a micro-scale system

    • Height of water surface at center of 40uL sessile drop at 115,200fps for ~1s during actuation by ~7MHz thickness mode ultrasound. Each data set was taken at the indicated ultrasound input power level (from 0-350 mW).
    • Date: 2021-11-28 to 2022-01-18
  28. Collection

    Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

    • The purpose of this collection is to curate online all the 3D models and related metadata representing the three-dimensional stratigraphy of Çatalhöyük Building 89 as they are disseminated through the open source virtual reality application Dig@IT.
    • Date: 2011 to 2015
  29. Collection

    Data from: Impact of Atmospheric River Reconnaissance Dropsonde Data on the Assimilation of Satellite Data in GFS

    • This collection are the satellite radiance data from the data denial experiments for the 2020 atmospheric river reconnaissance. The data are generated by the NCEP GDAS system during January 24 – March 18, 2020, corresponding to analyses in Zheng et al. 2022.
    • Date: 2020-01-24 to 2020-03-18
  30. Collection

    Data from: Impacts of Dropsonde Observations on Forecasts of Atmospheric Rivers and Associated Precipitation in the NCEP GFS and ECMWF IFS models

    • ECMWF and NCEP IVT and precipitation data from control forecasts and data denial forecasts (without dropsondes assimilated) for Atmospheric River Reconnaissance (AR recon) 2019 and 2020.
    • Date: 2019-02-01 to 2019-03-01 and 2020-01-24 to 2020-03-16
  31. Collection

    Data from: Implications of Byproduct Chemistry in Nanoparticle Synthesis

    • Absorption spectra of organic byproducts of tetrachloroaurate reduction by 2-(N-morpholino)ethanesulfonate (MES) were calculated via time-dependent density functional theory. These include small organic molecules, organic MES oligomers, and Au(I) complexes.
    • Date: 2016 to 2018
  32. Collection

    Data from: Improved Forecast Skill through the Assimilation of Dropsonde Observations from the Atmospheric River Reconnaissance Program

    • This dataset are initial and boundary conditions generated by West-WRF implemented at Scripps Institution of Oceanography of UC San Diego for the Atmospheric River Reconnaissance dropsonde data denial experiments described in Zheng et al. 2021 (JGR). With this dataset, one should be able to repeat the WRF simulations for the NoDROP and WithDROP experiments using WRF V3.9.1.1.
    • Date: 2016-02-14 to 2019-03-01
  33. Collection

    Data from: Increasing STEM Undergraduate Participation in Innovative Activities: Field Experimental Evidence

    • Measures of performance on an innovation contest by whether or not participants receive randomized encouragement, and whether participants self-selected into the contest or joined after receiving a monetary inducement for doing so.
    • Date: 2017-01 to 2017-07
  34. Collection

    Data from: Influence of Carbene and Phosphine Ligands on the Catalytic Activity of Gold Complexes in the Hydroamination and Hydrohydrazination of Alkynes

    • Several carbene structures and reaction intermediates for the Au catalyzed hydroamination of alkynes were calculated with Density Functional Theory Methods.
    • Date: 2019 to 2020
  35. Collection

    Data from: Instrumented Wave Gliders for Air-Sea Interaction and Upper Ocean Research

    • This collection regroups data sets collected during four major field programs from 2013 to 2020 from a fleet of Wave Gliders specifically designed and instrumented for air-sea interaction and upper ocean observations by the Air-Sea Interaction Laboratory at Scripps Institution of Oceanography.
    • Date: 2013 to 2020
  36. Collection

    Data from: Interannual variations in meltwater input to the Southern Ocean from Antarctic ice shelves

    • Height changes and basal melt rates of Antarctic ice shelves from satellite remote sensing, 1994–2018.
    • Date: 1994 to 2018
  37. Collection

    Data from: Internal tide structure and temporal variability on the reflective continental slope of southeastern Tasmania

    • This collection contains in situ data (from 3 moorings and 1 CTD/LADCP station) from the Tasman Tidal Dissipation Experiment (T-TIDE) that was analyzed in Marques et al. (2020).
    • Date: From 2015-01 to 2015-03
  38. Collection

    Data from: Is the Mediterranean the New Rio Grande? U.S. and E.U. Immigration Pressures in the Long Run

    • This project uses a gravity-style model to project bilateral migration flows for the next 40 years. It shows that Europe—unlike the US—will face substantial, demographically driven migration pressures from across the Mediterranean for decades to come.
    • Date: 2016-01-01 to 2016-05-31
  39. Collection

    Data from: Latent profile analysis of objectively measured sleep, physical activity, and sedentary time and associations with health in adult women

    • This dataset represents the analysis variables for a group of 372 women collected at 4 different sites across the United States, including sleep quality, physical activity and sedentary behaviors.
    • Date: 2012-10-10 to 2014-01-13
  40. Collection

    Data from: Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo

    • Microscopy data relative to measurements of cell sizes in early embryos of 3 echinoderm species (Patiria miniata, Lytechinus pictus and Patiriella regularis) and to lineage tracing experiments in the sea star Patiria miniata.
    • Date: 2018 to 2022
  41. Collection

    Data from: Machine learning for daily forecasts of Arctic sea-ice motion: an attribution assessment of model predictive skill

    • MATLAB R2021b, Python and bash files used for data download and analysis. Processed data and MATLAB R2021b plotting files.
    • Date: 1989 to 2021
  42. Collection

    Data from: Measuring Seafloor Strain with an Optical Fiber Interferometer

    • A 95.5 day long record of earth strain collected on the seafloor 95 km offshore Oregon was collected (ocean depth was 1910 m). The instrument used was a 200-m-long optical fiber cable, stretched between two anchors in an east-west line.
    • Date: 2015-10-24 to 2016-01-27
  43. Collection

    Data from: Mechanisms of heat flux across the Southern Greenland continental shelf in 1/10° and 1/12° ocean/sea ice simulations

    • Volume and heat fluxes across the Greenland continental shelf in two eddy-active coupled ocean/sea-ice simulations.
    • Date: 2005 to 2009
  44. Collection

    Data from: Mesopelagic fishes dominate otolith record of past two millennia in the Santa Barbara Basin

    • Two data files for Santa Barbara Basin, (1) individual fossil otolith data (geometric measurements, shape characteristics and elemental composition); (2) time series of otolith deposition rate and climate proxies.
    • Date: 1993 to 2015
  45. Collection

    Data from: Metabolic rates in the Agua Hedionda Lagoon during the 2020 Southern California red tide event

    • A time series from autonomous SeapHOx sensors (pH, dissolved oxygen (DO), salinity, temperature, and pressure) in the Agua Hedionda Lagoon, captured baseline conditions in 2018 and the effects of a massive red tide occurring along the Southern & Baja California coast during the spring of 2020.
    • Date: 2018-11-02 to 2018-12-24 and 2020-02-05 to 2020-06-14
  46. Collection

    Data from: Multi-Source Feature Fusion for Object Detection Association in Connected Vehicle Environments

    • This dataset contains labeled virtual and real-world examples of object detection association in a connected vehicle environment.
    • Date: 2020 to 2022
  47. Collection

    Data from: Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning

    • The kinetic rate constants of four biochemically relevant ligand-receptor systems were estimated and described in a publication. This collection includes input files, output files, trajectories, and statistics associated with the study.
    • Date: 2013 to 2015
  48. Collection

    Data from: Multiscale Modeling Shows How 2'-deoxy-ATP Rescues Ventricular Function in Heart Failure

    • Molecular dynamics simulations of myosin (1QVI) carried out with either ATP or dATP bound from the manuscript "Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure"
    • Date: 2020 to 2022
  49. Collection

    Data from: Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase

    • The input and output Brownian dynamics trajectories associated with this study.
    • Date: 2017 to 2020
  50. Collection

    Data from: Near-Inertial Surface Currents Around Islands

    • This collection contains numerical model output from a linear 1.5-layer reduced gravity model. These simulations are presented in Siegelman et al. (2022), which examines the behavior of near-inertial surface currents around circular islands.
    • Date: 2019 to 2021