Martin-King, Chloe; Nael, Ali; Ehwerhemuepha, Louis; Calvo, Blake; Gates, Quinn; Janchoi, Jamie; Ornelas, Elisa; Perez, Melissa; Venderby, Andrea; Miklavcic, John; Chang, Peter; Grant, Kenneth (2024). CIL:56291, Homo sapiens. In Cell Image Library. UC San Diego Library Digital Collections. Dataset. https://doi.org/10.6075/J0MS3T3C

Scan 20_I_CS_A -- The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide​​, TiffSlide, and QuPath​​.

• 2024

• Calvo, Blake
• Chang, Peter
• Ehwerhemuepha, Louis
• Gates, Quinn
• Grant, Kenneth
• Janchoi, Jamie
• Martin-King, Chloe
• Miklavcic, John
• Nael, Ali
• Ornelas, Elisa
• Perez, Melissa
• Venderby, Andrea

Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.

Imaging mode: Static digital pathology tissue scans
Visualization methods: Hematoxylin and eosin

• Cell Image Library Group ID: 20124

• Homo sapiens

• Pediatric inflammatory bowel disease

• data
• image
• text

• No linguistic content; Not applicable

Samplenumber: 56291

Doi: https://doi.org/10.6075/J0MS3T3C

Source data

• Source Record in the Cell Image Library: https://doi.org/10.7295/W9CIL56291

Reference

• CHOC Research Institute - Children's Hospital of Orange County: https://www.choc.org/research/
• Martin-King, Chloe; Nael, Ali; Ehwerhemuepha, Louis; Calvo, Blake; Gates, Quinn; Janchoi, Jamie; Ornelas, Elisa; Perez, Melissa; Venderby, Andrea; Miklavcic, John; Chang, Peter; Grant, Kenneth (2024). Patient and section data accompanying Pediatric Inflammatory Bowel Disease dataset. In Cell Image Library. UC San Diego Library Digital Collections. Dataset. https://doi.org/10.6075/J0474B2N

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2025-01-31