Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Collection

    Data from: Observations of turbulent structures at the base of the ocean mixed layer

    • Data and figure scripts associated with "Observations of turbulent structures at the base of the ocean mixed layer" (Andriatis et al., 2026; JPO)
    • Date: 2020-11-05 to 2020-11-14
  2. Collection

    Data and code from: Acoustic control of Rayleigh-regime liquid-jet breakup using a through-hole MHz transducer

    • Data from: Acoustic control of Rayleigh-regime liquid-jet breakup using a through-hole MHz transducer. Please read the associated manuscript for more details.
    • Date: 2025-09 to 2025-12
  3. Collection

    Data from: Pore-water flow through coastal gravel berms with layered sediments

    • The dataset includes pressure time-series and LiDAR data in MATLAB data format, as well as a movie file in MP4 format.
    • Date: 2025-06-18
  4. Collection

    The Women Inflammation and Tau Study (WITS)

    • WITS aims to identify factors that could help improve early detection and prevention of Alzheimer's in women at risk for the disease.
    • Date: 2020 to present
  5. Collection

    Aerosol Size Distribution Measurements at Utqiagvik from 2007 to 2021 (retrospective years) for Sustaining the Utqiagvik Aerosol Record of Decades (STUARD)

    • This dataset includes aerosol particle number size distribution measurements (Freud et al., 2017) collected intermittently between 2007-2021.
    • Date: 2007 to 2021
  6. Collection

    Experimental Datasets of Capillary Wave Turbulence in a Micro-Scale System

    • Experimental datasets of capillary wave turbulence, measured using ultra-high-speed digital holographic microscopy. Includes multi-datasets (acoustic capillary number 0–0.00332) and repeated trials, with full-field HDF5 and central-pixel data
    • Date: 2025-08 to 2025-12
  7. Collection

    Data from: Shoreline and beach slope detection using time-variance images

    • Shoreline coordinates and beach slopes derived from time-variance images, lidar, and photogrammetry, plus concurrent tidal elevation and offshore wave data. Collected July 2024 - December 2025 in Solana Beach, California and Seacliff, California.
    • Date: 2024-07 to 2025-12
  8. Collection

    Data from: Generation of mono(amino)carbenes from N-triftosyl amino hydrazonates with blue light

    • Structures involved in the mechanism for the formation of carbenes from hydrazonates via diazo compounds. Electronic structure calcluations for simple model carbenes. TD-DFT calculations for hydrazonate salts with different alkali metal cations.
    • Date: 2025-05 to 2026-02
  9. Collection

    An Annotated Checklist of the Bees (Hymenoptera: Anthophila) of San Diego County, California

    • This database represents an ongoing survey to document all the bee species that occur within the bounds of San Diego County. As this project is still ongoing, the database will be updated periodically with additions and/or corrections.
    • Date: 2015-07 to 2026-03
  10. Collection

    Data from: Estimates of extreme and low frequency reef-flat water levels at Ipan, Guam from offshore waves

    • This collection provides the reef face and shoreline bulk statistics and time series at Ipan, Guam used in Becker and Merrifield 2026.
    • Date: 2007 to 2016
  11. Collection

    Cancer Patient Assessment

    • Data collected March - June 2022 at NCI-Designated Cancer Center in SoCal via online survey aimed to gauge cannabis-related knowledge, attitudes, and behaviors among cancer survivors, alongside their experiences and symptoms. 5901 patients invited, 954 responded (16.2%).
    • Date: 2022-03 to 2022-06
  12. Collection

    Data from: Psychometric Evaluation of the Verbal List Learning Task with Food Words (VLLT-Food)

    • Data collected from participants completing two versions of a verbal list learning task to evaluate whether modifying the stimuli impacted performance.
    • Date: 2017-08 to 2018-05
  13. Collection

    North Atlantic Current Time Series from Satellite and Float Observations

    • This is a time series of the North Atlantic Current as it crosses between the Irminger Sea and the Porcupine Abyssal Plain region, calculated from satellite altimetry and Argo float data.
    • Date: 1993-01-01 to 2025-07-02
  14. Collection

    Data from: Real-time ground motion records of coastal cliff failures in San Diego County, California

    • Data from in situ geophysical sensors (tilt, creep, and displacement), weather and environmental records (temperature, precipitation, and wave height), and tides (height), collected in San Diego County (San Elijo State Beach and Del Mar) in 2023 and 2024.
    • Date: 2023 to 2025
  15. Collection

    Data from: Understanding regional pCO2 model biases and uncertainties in the Biogeochemical Southern Ocean State Estimate (B-SOSE)

    • This collection contains model code and data to run the Biogeochemical Southern Ocean State Estimate (B-SOSE) and obtain CO2 fugacity (fCO2). B-SOSE results under control and perturbed configurations are used to estimate optimized model parameters.
    • Date: 2019-09 to 2020-08
  16. Collection

    Energy density and content of forage species in the California Current Ecosystem

    • Energy density and content of forage species in the California Current Ecosystem were determined from samples collected in Southern and Central California during 2015-2019.
    • Date: 2015 to 2019
  17. Collection

    Data from: Spectral Refraction Modeling of Waves around the Steep Reef at Palau

    • This collection contains observations of bulk wave statistics from 10 sites around the island chain of Palau and wave estimates from a spectral refraction model.
    • Date: 2013 to 2023
  18. Collection

    Data from: A Crystalline Annelated Pyridin-1-ylidene and Its Isomerization into a Pyridin-3-ylidene

    • All output files for modeling the mechanism of HMDS-catalyzed carbene regioisomerization, as well as electronic structure calculations for comparing relevant model pyridinlyidenes.
    • Date: 2025
  19. Collection

    Ellen Browning Scripps Herbarium Collection

    • Digitized pressed seaweed specimens and associated metadata.
    • Date: 1904 to 2025-07
  20. Collection

    Quantification of norovirus GII in the Tijuana River estuary with ddPCR

    • This collection contains quantification of norovirus GII via ddPCR for the Tijuana River estuary.
    • Date: 2024-07-03 to 2025-01-09
  21. Collection

    Experiments for Optical Fiber Geophysical Sensors

    • Data from a Time Division Multiplexing experiment on optics-based geophysical sensors.
    • Date: 2024-10-22
  22. Collection

    Data from: Warming Band in Southern Ocean's Indian Sector: The Role of Remote Atlantic Buoyancy Forcing via Poleward-Shifting Circulation Response

    • Model output from two experiment suites. One uses MITgcm with regional surface perturbations; the other uses CESM1 with wind locking to isolate heat-forced changes. Both provide full global ocean data.
    • Date: 2022 to 2024
  23. Collection

    Data from: Harnessing AI data-driven global weather models for climate attribution: An analysis of the 2017 Oroville Dam extreme atmospheric river

    • This study explores storyline-based climate attribution with AI global weather models, whose short simulation inference times allow one to generate real-time attributions when public attention is heightened. It focuses on the atmospheric river episode of February 2017 that contributed to the Oroville Dam spillway incident in Northern California. Attributions are compared to those from a dynamical model, which represent a plausible "pseudo-reality". This collection contains the data used and generated in the aforementioned study.
    • Date: 2017-02-05 to 2017-02-11
  24. Collection

    Data from: A Regional High Resolution AI Weather Model for the Prediction of Atmospheric Rivers and Extreme Precipitation

    • Precipitation forecasts generated by AI models.
    • Date: 2025-03 to 2025-05
  25. Collection

    Griffith Lab Research Data Collection

    • This collection consists of data associated with Griffith Lab publications, which study structure-property-function relationships in complex energy-related materials.
    • Date: 2023 to present
  26. Collection

    Data from: pH-Dependent Surface Interactions and Structural Changes for DNA Adsorbed on TiO2 Particle Surfaces Has Implications for Environmental DNA

    • This collection contains data used in publication and is linked with figure numbers. Data contains ATR-FTIR spectroscopic data, pH measurements and UV-vis measurements.
    • Date: 2023-08 to 2025-05
  27. Collection

    Data from: The Missing Voices of #MeToo: Examining the Intersectionality of Digital Feminism in India

    • A literature review of 23 sources was conducted to assess the intersectionality of #MeToo in India. The first sheet on the data file lists the 53 sources subject to full text review. The second sheet sorts the extracted information into 75 variables.
    • Date: 2023-03 to 2023-06
  28. Collection

    Global Navigation Satellite System (GNSS) Airborne Radio Occultation (ARO) Observations from the Atmospheric River Reconnaissance Field Campaigns

    • Airborne radio occultation (ARO) observations were retrieved from the research aircraft (NOAA G-IV and AFRC WC-130s) deployed in the atmospheric river reconnaissance campaigns. The research flights were conducted over a wide area over the Pacific, from the US west coast to Guam.
    • Date: 2018 to present
  29. Collection

    Data from: Singlet Carbenes are Stereoinductive Main Group Ambiphiles

    • All output files for reactants, products, reaction intermediates, and transition states involved in insertion of chiral cyclic(alkyl)(amino)carbenes to E-H bonds. Additionally, output files from the simulation of NMR spectra for select products.
    • Date: 2024-05 to 2025-01
  30. Collection

    Data from: The 1991 California "Miracle March": Precipitation Myth or Miracle?

    • This collection contains the data and code necessary to reproduce the plots and analysis for "The 1991 California “Miracle March”: Precipitation Myth or Miracle?", published in Environmental Research Communications by Poulsen et al. (2025).
    • Date: 1900 to 2023
  31. Collection

    Data from: Spatial and temporal structure of the fog life cycle over Atlantic Canada and the Grand Banks

    • This collection contains the ocean and atmospheric data collected over 71 years over Atlantic Canada and the Grand Banks that was used to generate the figures from Formby-Fernandez et. al (2024).
    • Date: 1950 to 2020
  32. Collection

    Data from: Measuring Estuarine Total Exchange Flow from Discrete Observations

    • Matlab code for calculating Total Exchange Flow (TEF) using data from the three estuary models. Calculation scripts for five different methods as described in “Measuring Estuarine Total Exchange Flow from Discrete Observations” are included.
    • Date: 2005 to 2012
  33. Collection

    Data from: Observing Ocean-Atmosphere Fluxes From Autonomous Surface Vehicles

    • This collection contains raw and processed data collected from the Research platform FLIP and by two Wave Gliders during the ONR funded Langmuir Cell DRI experiment conducted in Spring 2017 off the coast of Southern California.
    • Date: 2017-03-21 to 2017-04-06
  34. Collection

    Data from: Flooding Projections due to Groundwater Emergence Caused by Sea Level Variability

    • Processed RBR solo pressure data, CTD density profiles, and atmospheric pressure-corrected GWT measurements from four groundwater monitoring wells in Imperial Beach, CA, (Dec 2021-May 2024) used to study sea level impact on flood risks.
    • Date: 2021-12-08 to 2024-05-14
  35. Collection

    Data from: Are AI weather models learning atmospheric physics? A sensitivity analysis of cyclone Xynthia

    • This collection contains the data for the manuscript titled "Are AI Weather Models Learning Atmospheric Physics? A Sensitivity Analysis of Cyclone Xynthia", which is necessary to reproduce the results presented.
    • Date: 2024
  36. Collection

    Fish Length-Weight Parameters

    • This collection contains fish length-weight data and parameters from various life history projects conducted by the Sandin Lab at Scripps Institution of Oceanography, UC San Diego.
    • Date: 2020 to present
  37. Collection

    A dataset of chronic nicotine-induced genes in HCC38 breast cancer cells

    • These data added value to our original research article by providing an unbiased view of the number and class of genes upregulated by nicotine in breast cancer cells.
    • Date: 2024
  38. Collection

    Chronobiologically-Informed Features from CGM Data Provide Unique Information for XGBoost Prediction of Longer-Term Glycemic Dysregulation in 8,000 Individuals with Type-2 Diabetes

    • This collection includes engineered features extracted from continuous glucose monitoring (CGM; Dexcom G6) in order to classify long-term glycemic dysregulation in a large, uncontrolled cohort over the course of a year. The goal of sharing these data are to encourage better algorithm development for predicting types of dysregulated days as well as within-individual dysregulation.
    • Date: 2022-04
  39. Collection

    Argo BathYmetry SenSing (ABYSS)

    • This collection contains locations, depths and times of ocean bathymetry detection using Deep Argo floats, along with estimated horizontal displacements.
    • Date: 2014 to present
  40. Collection

    Data from: Airborne remote sensing of concurrent submesoscale dynamics and phytoplankton

    • This archive contains the code and data needed to generate the figures in the publication: "Airborne remote sensing of concurrent submesoscale dynamics and phytoplankton" (Lang, Sarah E.; Omand, Melissa M.; Lenain, Luc). Data presented was collected as part of the Submesoscale Ocean Dynamics Experiment (S-MODE).
    • Date: 2021-10-29 to 2021-10-30
  41. Collection

    Data from: Inferring free surface disturbance properties from Kelvin wakes using convolutional neural network

    • Surface elevation data for training the convolutional neural networks.
    • Date: 2023
  42. Collection

    Eliminating In-Home Smoking project–urinary biomarker evidence of tobacco and cannabis smoke exposure of children

    • Real-time feedback alerts for elevated in-home air particle concentrations to reduce child secondhand smoke exposure, as measured by biomarkers of nicotine and THC.
    • Date: 2012 to 2015; 2019 to 2022
  43. Collection

    California Imaging FlowCytobot Network (CA IFCB Network)

    • The California Imaging Flowcytobot Network (CA IFCB Network) is a statewide network of automated in situ phytoplankton measurements to aid implementation of an automated early warning system for the detection of potential Harmful Algal Blooms (HABs).
    • Date: 2016 to 2024
  44. Collection

    Data from: Advanced Monitoring of Subsurface Sediment Structures Within Gravel Berms

    • This collection contains research dataset used to study seasonal changes in gravel berm topography and subsurface sediments in Torrey Pines State Beach and South Carlsbad State Beach in San Diego North County.
    • Date: 2023-03 to 2023-10
  45. Collection

    Hornsund Fjord 2023: Broadband Active Acoustic and Oceanographic Data

    • This is a data set containing broadband active acoustic and oceanographic data collected in Hornsund Fjord, Svalbard.
    • Date: 2023-07-07 to 2023-07-12
  46. Collection

    Data from: A new method for diagnosing effective radiative forcing from aerosol-cloud interactions in climate models

    • This dataset includes a new method for estimating shortwave ERFaci from liquid clouds using cloud radiative kernels and MODIS joint histograms, offering insights into the Twomey effect, liquid water path, and cloud fraction adjustments.
    • Date: 2024
  47. Collection

    Faces of select bees from San Diego, CA

    • A collection of photographs featuring the faces of bees from San Diego, CA, showcasing the diversity of native bees inhabiting Southern California's bee biodiversity hotspot.
    • Date: 2011 to 2014
  48. Collection

    Data from: Subaerial Profiles at Two Beaches: Equilibrium and Machine Learning

    • This collection contains observations of beach elevation and model derived wave statistics from two locations in San Diego County: Torrey Pines State Beach and Black’s Beach (La Jolla, CA).
    • Date: 2015-01 to 2023-12
  49. Collection

    Green New Deal at UC San Diego

    • A collection of documents and other media recording the campaigns of the Green New Deal at UC San Diego, a grassroots climate justice organization that successfully lobbied the UC to transform its climate change policies.
    • Date: 2019 to 2024
  50. Collection

    Data from: Genuine Carbene Versus Carbene-Like Reactivity

    • Optimized geometries, frequencies, and single point calculations for reactants, products, reaction intermediates, and transition states involved in forming cyclic(aryl)(amino)carbene-metal complexes and decomposition products.
    • Date: 2023-04 to 2023-11