Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Collection

    Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) and Global Ocean Biogeochemistry (GO-BGC) Biogeochemical-Argo Float Data Archive

    • Data from biogeochemical Argo profiling floats within the SOCCOM and GO-BGC programs. Additional floats outside of these programs may also be included, provided their data-streams are managed by the Monterey Bay Aquarium Research Institute (MBARI).
    • Date: 2014-03-27 to present
  2. Collection

    Data from: Airborne observations of surface winds, waves and currents from meso to submesoscales

    • Coincident and collocated high-resolution observations of surface currents and directional properties of surface waves collected from an airborne instrument, the Modular Aerial Sensing System (MASS), collected off the coast of Southern California.
    • Date: 2021-05-18 through 2021-11-05
  3. Collection

    Data from: Toward probabilistic post-fire debris-flow hazard decision support

    • For a Southern CA domain, from a 24-hour lead time forecast using the WRF model, on a 1-km grid for 100 ensemble members: 5-minute precipitation output for 12 UTC 8 Jan. 2018 to 12 UTC 10 Jan. 2018 and 12 UTC 1 Feb. 2019 to 12 UTC 3 Feb. 2019.
    • Date: 2022-01-01 to 2022-02-28
  4. Collection

    Data from: Selectivity and ranking of tight-binding JAK-STAT inhibitors using Markovian milestoning with Voronoi tessellations

    • The data contains the Simulation Enabled Estimation of Kinetic Rates (SEEKR) simulations for the JAK2 and JAK3-ligand complexes with instructions to compute the residence times of the ligands in these complexes.
    • Date: 2020 to 2022
  5. Collection

    Data from: Wave-tide interaction for a strongly modulated wave field

    • This collection contains the data sets and code required to generate each figure presented in the publication Ho, A., Merrifield, S. M., and Pizzo, N. (2022). Wave-tide interaction for a strongly modulated wave field. Journal of Physical Oceanography.
    • Date: 2020-08-01 to 2021-08-01
  6. Collection

    Data from: Autumn precipitation: the competition with Santa Ana winds in determining fire outcomes in southern California

    • This dataset includes two versions of the Santa Ana Wind Regional Index (SAWRI) and Livneh precipitation data from 1948-2018.
    • Date: Compiled: 1948 to 2018
  7. Collection

    Data and Code from: Buoyancy Forcing Dominates the Cross-Equatorial Ocean Heat Transport Response to Northern Hemisphere Extratropical Cooling

    • Fortran source code to developed to override wind stress in the Community Earth System Model (CESM) v. 1.2 and resulting GCM output data from Luongo et al. (2022).
    • Date: 2021-05 to 2021-10
  8. Collection

    Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

    • CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
    • Date: 2015-09-18 to 2015-09-20
  9. Collection

    Atmospheric and oceanographic measurements from a Wave Glider autonomous surface vehicle collected off the coast of Southern California from May 2020 to December 2021

    • This collection contains meteorology, wave, and current data from Wave Glider Autonomous Surface Vehicles (ASVs) gathered in a series of field deployments conducted off the coast of Southern California from May 2020 to December 2021. Our approach involved operations in close proximity to fixed National Data Buoy Center (NDBC), Coastal Data Information Program (CDIP), and Scripps Institution of Oceanography (SIO) moored buoy assets, which provided ground-truth data to characterize the quality of the Wave Glider measurements.
    • Date: 2020-05 to 2021-12
  10. Collection

    Data from: Short-term variability of atmospheric helium revealed through a cryo-enrichment method

    • He/N2 observations from Scripps Pier and supplementary O2/N2, Ar/N2 and CO2 data.
    • Date: 2022-04-23 to 2022-05-25
  11. Collection

    Data from: Plankton energy flows using a global size-structured and trait-based model

    • This collection includes a global 20 year (1990-2009) climatology of diagnostic and prognostic variables for the Size-based Plankton Ecological TRAits (MARBL-SPECTRA) model.
    • Date: 1990 to 2009
  12. Collection

    Data from: Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package

    • Data, functions, and scripts associated with "Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package" (Kachelein et al. 2022).
    • Date: 2010 to 2021
  13. Collection

    Art of Science

    • UC San Diego Library Art of Science contest submissions.
    • Date: 2021-02 to 2022-08
  14. Collection

    Data from: Airborne observations of shoaling and breaking internal waves

    • This collection contains data presented in: "Airborne observations of shoaling and breaking internal waves." This includes a mosaic of sea surface temperature, spectral analysis of temperature structures, surface velocities, and areas undergoing breaking.
    • Date: 2015-08-01
  15. Collection

    Shore Stations Program Data Archive: Current and historical coastal ocean temperature and salinity measurements from California stations

    • Data from the Shore Stations Program consists of current and historical daily, manual measurements of surface temperature and salinity from the nine active stations located on the California coastline.
    • Date: 1916 to present
  16. Collection

    Meteorological and Aerosol Measurements near the Salton Sea, California

    • This collection contains meteorological and aerosol measurements collected at a field site located near the western shoreline of the Salton Sea, California. These data are designed to study the dynamics and physical properties of dust storms and other aerosol events in the region.
    • Date: 2019-12 to present
  17. Collection

    Underway Shipboard Acoustic Doppler Current Profiler (SADCP) Data Archive

    • Underway shipboard acoustic Doppler current profiler (SADCP) database assembled from the public archive of CODAS post-processed data.
    • Date: 1990 to 2020
  18. Collection

    Data from: Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo

    • Microscopy data relative to measurements of cell sizes in early embryos of 3 echinoderm species (Patiria miniata, Lytechinus pictus and Patiriella regularis) and to lineage tracing experiments in the sea star Patiria miniata.
    • Date: 2018 to 2022
  19. Collection

    Historical Catalog of Winter Weather Regimes Impacting California, 1949-2017

    • This dataset contains a historical catalog of daily atmospheric winter weather regimes observed over the North Pacific and western North America spanning 1949-2017. These weather regimes have been identified as important drivers of atmospheric river landfalls, Santa Ana winds, floods, and wildfires in California.
    • Date: November-February 1949 to 2017
  20. Collection

    Data from: SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine

    • This data set contains the files necessary to recreate the results in the paper "SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine".
    • Date: 2020-08 to 2022-03
  21. Collection

    Center for Western Weather and Water Extremes (CW3E) Surface Meteorological Observational Dataset

    • CW3E Surface Meteorological Observational Dataset: temperature, relative humidity, pressure, precipitation, and soil moisture and temperature at six levels collected every 2 minutes, from 11 stations in the Russian, Yuba, Feather, and Prado watersheds.
    • Date: 2017 to present
  22. Collection

    XRF and FTIR data from Pismo Beach Air Quality Study from May 2019 - May 2021

    • XRF and FTIR atmospheric aerosol measurements from five campaigns conducted in the Oceano Dunes from May 2019 to May 2021. This includes dust, sea salt, non-sea salt sulfate, organic mass, and an unidentified fraction.
    • Date: 2019-05-14 to 2021-05-24
  23. Collection

    Scripps Argo Trajectory-Based Velocity Product

    • This collection contains absolute velocity estimates from quality controlled Argo trajectory files. Both Scripps trajectory products include trajectories from Core, BGC and Deep Argo floats starting in 2001. The Scripps trajectory products provide velocities between 800-1200 dbar or 100-6200 dbar.
    • Date: 2001 through 2020
  24. Collection

    Data from: Using a Lagrangian particle tracking model to evaluate impacts of El Niño-related advection on euphausiids in the southern California Current System

    • These supplemental animations depict particle backtracks for six euphausiid species sampled in the southern California Current System in spring, 2008-2017. The particle model runs four months backward to determine winter water mass origins.
    • Date: 2007-11-01 to 2017-03-31
  25. Collection

    Data from: Quantitative regional observations of the geological influence on primary sandy beaches

    • The dataset includes mapped beach elevations, and gravel/bedrock locations in GeoTIFF format.
    • Date: 2017-10-01 to 2021-03-31
  26. Collection

    Data from: Impact of Atmospheric River Reconnaissance Dropsonde Data on the Assimilation of Satellite Data in GFS

    • This collection are the satellite radiance data from the data denial experiments for the 2020 atmospheric river reconnaissance. The data are generated by the NCEP GDAS system during January 24 – March 18, 2020, corresponding to analyses in Zheng et al. 2022.
    • Date: 2020-01-24 to 2020-03-18
  27. Collection

    Data from: Retrieval of the Sea Spray Aerosol Mode from Submicron Particle Size Distributions and Supermicron Scattering during LASIC

    • This collection contains sea spray mode fitting parameters retrieved from Mie inversion of submicron size distributions and supermicron scattering during the LASIC and NAAMES campaigns. Sea spray mode retrieval and Mie scattering codes are also provided.
    • Date: 2020 to 2022
  28. Collection

    Data from: Metabolic rates in the Agua Hedionda Lagoon during the 2020 Southern California red tide event

    • A time series from autonomous SeapHOx sensors (pH, dissolved oxygen (DO), salinity, temperature, and pressure) in the Agua Hedionda Lagoon, captured baseline conditions in 2018 and the effects of a massive red tide occurring along the Southern & Baja California coast during the spring of 2020.
    • Date: 2018-11-02 to 2018-12-24 and 2020-02-05 to 2020-06-14
  29. Collection

    Data from: Genetic characterization of outbred Sprague Dawley rats and utility for genome-wide association studies

    • This collection houses supplemental figures, tables, and files corresponding to the publication titled “Genetic characterization of outbred Sprague Dawley rats and utility for genome-wide association studies”, authored by Gileta et al.
    • Date: 2011 to 2021
  30. Collection

    Data from: A Broadband View of the Sea Surface Height Wavenumber Spectrum

    • This collection has SSH observations from airborne lidar used in the analysis presented in Villas Bôas et al. (2022)
    • Date: 2019-03-28 to 2019-04-10
  31. Collection

    Training image data for: Environmental and ecological drivers of harmful algal blooms in the Southern California Bight

    • The datasets include example images of marine protists and copepods. The images were collected by the Scripps Plankton Camera (http://spc.ucsd.edu/), located at the end of the Scripps Pier, La Jolla, CA, at the tide-dependent depth of approximately 3-4 m.
    • Date: 2015 to 2019
  32. Collection

    Southern California Narrow Cold-Frontal Rainband (NCFR) Catalogue (1995-2020)

    • The following dataset includes the complete list of NCFR events for Southern California from 1995-2020. Supplemental figures including synoptic meteorology plots using ERA5 reanalysis data, level-II NEXRAD composite plots created using LROSE, and water year and monthly NCFR figures are also provided. A README file desribing each component is included.
    • Date: 2019 to 2020
  33. Collection

    Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization

    • This collection integrates highly accurate 3D snapshots of Bodie's historic buildings before/after disturbance, or post-restoration, and other 3D geospatial data that were used to monitor and digitally preserve important cultural resources at Bodie California State Historic Park.
    • Date: 2015 and 2020
  34. Collection

    Structural Tests of Full-Scale Composite Airframe-Representative Structure under Blunt Loading Simulating High-Energy Wide Area Blunt Impact (HEWABI) by Ground Service Equipment

    • Datasets from High Energy Wide Area Blunt Impact (HEWABI) specimens testing performed at UCSD between August and December 2019.
    • Date: 2019-08 to 2019-12
  35. Collection

    Data from: Improved Forecast Skill through the Assimilation of Dropsonde Observations from the Atmospheric River Reconnaissance Program

    • This dataset are initial and boundary conditions generated by West-WRF implemented at Scripps Institution of Oceanography of UC San Diego for the Atmospheric River Reconnaissance dropsonde data denial experiments described in Zheng et al. 2021 (JGR). With this dataset, one should be able to repeat the WRF simulations for the NoDROP and WithDROP experiments using WRF V3.9.1.1.
    • Date: 2016-02-14 to 2019-03-01
  36. Collection

    Radiosonde Data Collected During California Storms

    • Vertical profiles of temperature, humidity, pressure, and wind speed collected during Atmospheric River events in California (2017-2021).
    • Date: 2016 to 2021
  37. Collection

    Gas composition and fluorescence data for: Continuous Measurements of Volatile Gases as Detection of Algae Crop Health

    • Approximately one month of gas composition data (from m/z 18-215) from three separate carboys averaged into 15-minute bins which was collected by chemical ionization mass spectrometry. Approximately one month of twice daily single point algae fluorescence grab samples as well as continuously collected algae fluorescence during each carboy infection period as described in the manuscript.
    • Date: 2019-11-08 to 2019-12-05
  38. Collection

    Data from: The Seasonal Cycle of Significant Wave Height in the Ocean: Local Versus Remote Forcing

    • This collection consists of NetCDF files that contain intermediate products derived from observer and modelled data produced by the French Research Institute for Exploitation of the Sea (IFREMER) and Remote Sensing Systems, corresponding to analysis by Colosi et al. (2021).
    • Date: 1993-01-01 to 2016-12-31
  39. Collection

    Data from: Instrumented Wave Gliders for Air-Sea Interaction and Upper Ocean Research

    • This collection regroups data sets collected during four major field programs from 2013 to 2020 from a fleet of Wave Gliders specifically designed and instrumented for air-sea interaction and upper ocean observations by the Air-Sea Interaction Laboratory at Scripps Institution of Oceanography.
    • Date: 2013 to 2020
  40. Collection

    SeaFET & SeapHOx

    • Documentation for SeaFET and SeapHOx oceanographic sensors.
    • Date: 2008 to 2021
  41. Collection

    Western Pacific Atmospheric River Object Data from MODE detection software using West-WRF, GEFS, and MERRA-2

    • The collection contains NetCDF files of atmospheric river objects as processed through the Method for Object-based Diagnostic Evaluation software.
    • Date: 2006-12 to 2017-03
  42. Collection

    Data from: Soft robotic steerable micro-catheter for the endovascular treatment of cerebral disorders

    • Results of analysis and experiment on steerable microcatheters and microguidewires, including video and raw data.
    • Date: 2017-01-01 to 2021-06-30
  43. Collection

    The Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study

    • Observational data and analysis from the NSF-funded Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study.
    • Date: 2015
  44. Collection

    Scripps Ecological Observatory

    • Flow cytometry and dissolved gas data (oxygen and argon) collected at the Ellen Browning Scripps Pier.
    • Date: 2019 to present
  45. Collection

    Data from: Cyclic(Alkyl)(Amino)Carbene Ligands Enable Cu-Catalyzed Markovnikov Protoboration and Protosilylation of Terminal Alkynes: A Versatile Portal to Functionalized Alkenes

    • Included are the Gaussian output files (.chk, .fchk, and .log) from DFT calculations on the free carbenes explored in the protoboration and protosilylation of alkynes.
    • Date: 2020 to 2021
  46. Collection

    Data from: Ocean Surface Salinity Response to Atmospheric River Precipitation in the California Current System

    • Oceanic and atmospheric measurements, reanalysis and modeled outputs in the California Current System.
    • Date: 1992 to 2019
  47. Collection

    Data from: The Oceanic Barrier Layer in the Eastern Indian Ocean as a Predictor for Rainfall over Indonesia and Australia

    • This collection consists of E3SMv0 model and variety of observational data and scripts in support of relevant manuscript focused on the relationship of the barrier layer in a region West of Sumatra and the terrestrial rainfall over Indonesia and Australia.
    • Date: 2018 to 2020
  48. Collection

    Data from: Observations of strongly modulated surface wave and wave breaking statistics at a submesoscale front

    • This collection contains data presented in Vrecica et al 2021, including an overview of a submesoscale front, wave statistics, and wave breaking statistics.
    • Date: 2018-04-17
  49. Collection

    Data from: Eddy-induced acceleration of Lagrangian floats

    • Simulated Argo float positions computed using velocities from the Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2) project.
    • Date: 2016-2019
  50. Collection

    Data from: Effect of atmospheric forcing resolution on simulated mixed layer depth in the North Pacific

    • This dataset contains daily output from two eddying ocean simulations in the North Pacific. The two experiments have the same configuration except for the atmospheric forcing resolution.
    • Date: 2014-2018