Browse by Collection: UCSD Research Data Collections

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1. 
   Collection

   Data from: Observations and Numerical Simulations of the Onset and Growth of Langmuir Circulations

   • This collection contains data from observations and numerical simulations of Langmuir circulations, along with the relevant routines to generate figures in Andriatis et al. 2024.
   • Date: 2020-11-04 to 2020-11-25
2. 
   Collection

   Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

   • CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
   • Date: 2015-09-18 to 2015-09-20
3. 
   Collection

   Data from: Observations of strongly modulated surface wave and wave breaking statistics at a submesoscale front

   • This collection contains data presented in Vrecica et al 2021, including an overview of a submesoscale front, wave statistics, and wave breaking statistics.
   • Date: 2018-04-17
4. 
   Collection

   Data from: Observations of surface cobbles at two southern California beaches

   • Date: 2008 to 2018
5. 
   Collection

   Data from: Observations of Surface Gravity Wave Spectra from Moving Platforms

   • This collection consists of ocean and atmospheric observations (e.g., waves and winds) collected off the coast of San Diego and San Francisco California from instrumented Boeing Liquid Robotics SV3 Wave Gliders.
   • Date: 2020-09-01 to 2021-11-04
6. 
   Collection

   Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

   • In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
   • Date: 2015-01 to 2015-03
7. 
   Collection

   Data from: Observing Ocean-Atmosphere Fluxes From Autonomous Surface Vehicles

   • This collection contains raw and processed data collected from the Research platform FLIP and by two Wave Gliders during the ONR funded Langmuir Cell DRI experiment conducted in Spring 2017 off the coast of Southern California.
   • Date: 2017-03-21 to 2017-04-06
8. 
   Collection

   Data from: Ocean Surface Salinity Response to Atmospheric River Precipitation in the California Current System

   • Oceanic and atmospheric measurements, reanalysis and modeled outputs in the California Current System.
   • Date: 1992 to 2019
9. 
   Collection

   Data from: Overcrowded Housing Reduces COVID-19 Mitigation Measures and Lowers Emotional Health Among San Diego Refugees from September to November of 2020

   • Data for the present cross-sectional study were collected between September 2020 and November 2020 as part of PANA’s biannual community survey to address the primary research question: What is the association between housing and COVID-19 vulnerability?
   • Date: 2020-09 to 2020-11
10. 
    Collection

    Data from: pH-Dependent Surface Interactions and Structural Changes for DNA Adsorbed on TiO2 Particle Surfaces Has Implications for Environmental DNA

    • This collection contains data used in publication and is linked with figure numbers. Data contains ATR-FTIR spectroscopic data, pH measurements and UV-vis measurements.
    • Date: 2023-08 to 2025-05
11. 
    Collection

    Data from: Plankton energy flows using a global size-structured and trait-based model

    • This collection includes a global 20 year (1990-2009) climatology of diagnostic and prognostic variables for the Size-based Plankton Ecological TRAits (MARBL-SPECTRA) model.
    • Date: 1990 to 2009
12. 
    Collection

    Data from: Prediction of Threonine-Tyrosine Kinase Receptor-Ligand Unbinding Kinetics with Multiscale Milestoning and Metadynamics

    • Heat shock protein 90 (HSP90) and threonine tyrosine kinase (TTK) simulation enabled estimation of kinetic rates (SEEKR) calculations using both steered molecular dynamics and metadynamics.
    • Date: 2022-05 to 2024-06
13. 
    Collection

    Data from: Psychometric Evaluation of the Verbal List Learning Task with Food Words (VLLT-Food)

    • Data collected from participants completing two versions of a verbal list learning task to evaluate whether modifying the stimuli impacted performance.
    • Date: 2017-08 to 2018-05
14. 
    Collection

    Data from: QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations

    • The data set contains the files necessary to recalculate/reproduce the unbinding rates of ligands for the model host-guest systems and Hsp90-inhibitor complexes in the paper "QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations."
    • Date: 2021 to 2023
15. 
    Collection

    Data from: Quantifying Bioluminescent Light Intensity in Breaking Waves using Numerical Simulations

    • This collection features velocity, volume fraction, and velocity gradient data interpolated onto a uniform Cartesian grid, along with Basilisk code for simulating breaking waves and Julia code for simulating bioluminescence.
    • Date: 2024
16. 
    Collection

    Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

    • This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
    • Date: 2015-03 to 2018-09
17. 
    Collection

    Data from: Quantitative regional observations of the geological influence on primary sandy beaches

    • The dataset includes mapped beach elevations, and gravel/bedrock locations in GeoTIFF format.
    • Date: 2017-10-01 to 2021-03-31
18. 
    Collection

    Data from: Readily Available Primary Aminoboranes as Powerful Reagents for Aldimine Synthesis

    • Date: 2017 to 2018
19. 
    Collection

    Data from: Real-time ground motion records of coastal cliff failures in San Diego County, California

    • Data from in situ geophysical sensors (tilt, creep, and displacement), weather and environmental records (temperature, precipitation, and wave height), and tides (height), collected in San Diego County (San Elijo State Beach and Del Mar) in 2023 and 2024.
    • Date: 2023 to 2025
20. 
    Collection

    Data from Scripps Research Expeditions 1953-2005

    • Data and documents from Scripps Institution of Oceanography research vessel expeditions from 1953-2005, including geophysical, water column, and sea surface measurements.
    • Date: 1953 to 2005