Browse by Collection: UCSD Research Data Collections

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1. 
   Collection

   Data from: Electrostatic interactions as mediators in the allosteric activation of PKA RIalpha

   • Molecular dynamics input files, trajectories and analysis scripts used in the paper "Electrostatic interactions as mediators in the allosteric network of PKA RIalpha".
   • Date: 2015-09-15
2. 
   Collection

   Data from: Drift-Corrected Seafloor Vertical Deformation at Axial Seamount 2013-2014

   • Data from a Self-Calibrating Pressure Recorder (SCPR) deployed at Axial Seamount from 2013 to 2015. This is seafloor height change (cm), converted from pressure (kPa), corrected for ocean tides and pressure gauge drift.
   • Date: 2015-08-25
3. 
   Collection

   Data from: Airborne observations of shoaling and breaking internal waves

   • This collection contains data presented in: "Airborne observations of shoaling and breaking internal waves." This includes a mosaic of sea surface temperature, spectral analysis of temperature structures, surface velocities, and areas undergoing breaking.
   • Date: 2015-08-01
4. 
   Collection

   Research based PAM50 Signature from the Women's Healthy Eating and Living (WHEL) Study

   • PAM50 subtype calls, ROR risk groups and scores are provided.
   • Date: 2015-07-29 to 2015-11-06
5. 
   Collection

   An annotated checklist of the bees (Hymenoptera: Anthophila) of San Diego County, California

   • This database represents an ongoing survey to document all the bee species that occur within the bounds of San Diego County. As this project is still ongoing, the database will be updated periodically with additions and/or corrections.
   • Date: July 2015 to August 2020
6. 
   Collection

   Lawrence Livermore National Laboratory (LLNL) Open Data Initiative

   • Lawrence Livermore National Laboratory’s Data Science Institute shares some of LLNL’s challenging and unique data sets with the larger data science community through its Open Data Initiative.
   • Date: July 2015 to present
7. 
   Collection

   EarthCube User Scenario Collection

   • A collection of earth scientists' descriptions of their cyberinfrastructure needs, developed for the NSF EarthCube program.
   • Date: 2015-05-01 to 2016-09-01
8. 
   Collection

   Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

   • This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
   • Date: 2015-03 to 2018-09
9. 
   Collection

   Data from: A Living Vector Field Reveals Constraints on Galactose Network Induction in Yeast

   • To study how cellular traits produce population phenotypes, we built living vector fields from single-cell timecourses of the proteins Gal3p and Gal1p as yeast switched to galactose from other nutrients. This collection has data and analysis codes.
   • Date: 2015 to 2016
10. 
    Collection

    Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization

    • This collection integrates highly accurate 3D snapshots of Bodie's historic buildings before/after disturbance, or post-restoration, and other 3D geospatial data that were used to monitor and digitally preserve important cultural resources at Bodie California State Historic Park.
    • Date: 2015 and 2020
11. 
    Collection

    Data from: Episodic Southern Ocean heat loss and its mixed layer impacts revealed by the furthest south multi-year surface flux mooring

    • This dataset contains Quality Controlled daily mean air-sea heat flux estimates from the NSF Ocean Observatories Initiative Southern Ocean mooring site for the period 2015 to 2017, as used in the analysis of Ogle et al. 2018 (doi:10.1029/2017GL076909)
    • Date: 2015 to 2017
12. 
    Collection

    Data from: Internal tide structure and temporal variability on the reflective continental slope of southeastern Tasmania

    • This collection contains in situ data (from 3 moorings and 1 CTD/LADCP station) from the Tasman Tidal Dissipation Experiment (T-TIDE) that was analyzed in Marques et al. (2020).
    • Date: From 2015-01 to 2015-03
13. 
    Collection

    Data from: Observations and Modeling of Ocean Circulation in the Seychelles Plateau Region

    • This collection contains raw and processed data from a variety of velocity, pressure, temperature and salinity sensors deployed from December 2016 to March 2019 over the Seychelles Plateau and a subset of an Ocean General Circulation POP model from the South Tropical Indian Ocean.
    • Date: Data: 2015 to 2019; Model: 1993 to 2009
14. 
    Collection

    Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

    • In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
    • Date: 2015-01 to 2015-03
15. 
    Collection

    Data from: Southern California Coastal Response to the 2015-16 El Niño

    • Airborne lidar datasets collected on 6-October-2015 and 22-March-2016, and processed into 1-m resolution digital elevation models.
    • Date: 2015 to 2016
16. 
    Collection

    Native bees in San Diego's coastal sage scrub reserves and fragments, surveyed in 2015 and 2016

    • A dataset of bees and plants in coastal sage scrub reserves and habitat fragments in coastal San Diego County, collected by PhD student Keng-Lou James Hung in 2015 and 2016.
    • Date: 2015 to 2016
17. 
    Collection

    Plant-pollinator interaction networks in coastal sage scrub reserves and fragments in San Diego

    • Data here describe the interactions between plants and putative pollinators in large natural reserves (area > 500 ha; n = 6) and small habitat fragments (area < 60 ha; n = 6) of coastal sage scrub habitat.
    • Date: 2015 to 2016
18. 
    Collection

    The Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study

    • Observational data and analysis from the NSF-funded Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study.
    • Date: 2015
19. 
    Collection

    Training image data for: Environmental and ecological drivers of harmful algal blooms in the Southern California Bight

    • The datasets include example images of marine protists and copepods. The images were collected by the Scripps Plankton Camera (http://spc.ucsd.edu/), located at the end of the Scripps Pier, La Jolla, CA, at the tide-dependent depth of approximately 3-4 m.
    • Date: 2015 to 2019
20. 
    Collection

    Aerosol Composition and Size Measurements at Fresno and Fontana

    • Non-refractory aerosol particle and refractory black carbon mass concentrations, size distributions, and coatings along with single particle compositions and organic aerosol functional groups in Fresno and Fontana.
    • Date: 2014-12-19 to 2015-01-13 (Fresno); 2015-07-04 to 2015-07-28 (Fontana)