Library Digital Collections
Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1.
    Collection

    BindingDB: Measured Binding Data for Protein-Ligand and Other Molecular Systems

    • This collection contains the full BindingDB dataset of experimental protein-ligand and host-guest binding data.
    • Date: 2000 to present
  2. Collection

    Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

    • In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
    • Date: 2015-01 to 2015-03
  3. Collection

    CCHDO Hydrographic Data Archive

    • The CCHDO Hydrographic Data Collection contains high quality, global, vessel-based CTD and Niskin bottle data from GO-SHIP, WOCE, CLIVAR and other repeat hydrography programs past and present.
    • Date: 1972 to present
  4. Collection

    Standard Operating Procedure Documents for Coral Reef Ecological Monitoring

    • This collection contains documents describing methods used by the Sandin Lab to collect standardized coral reef community ecology data.
    • Date: 2010 to Present
  5. Collection

    Center for Environmental Imaging Collection

    • The Center for Environmental Imaging (CEI) is an effort to digitally archive imagery of the natural world. This collection includes image datasets from a diversity of projects and environmental habitats.
    • Date: 2012 to present
  6. Collection

    Supplemental large-area imaging data from: Groundtruthing assessments of lab-based coral thermal tolerance with large-area imaging

    • This collection includes the supplemental large-area imaging (LAI) data from a study conducted on three reefs in southern Taiwan with different thermal histories. The study compared in-situ LAI monitoring with ex-situ experiments with the goal of groundtruthing the experimental results.
    • Date: 2022-04-20 to 2022-09-23
  7. Collection

    100 Island Challenge Collection

    • The 100 Island Challenge is a collaborative effort to describe the variation of coral reefs from across the globe. We combine classical field surveys with innovative imaging and data technologies to archive reefs digitally and watch how populations change through time.
    • Date: 2012 to present
  8. Collection

    Island-Ocean Connection Challenge Monitoring Data

    • The Island-Ocean Connection Challenge (IOCC) is a global effort that aims to better understand the linkages between islands and the ocean by using standardized monitoring methods to measure the impact of island restorations on the terrestrial environment and the near-shore marine environment. Here we provide all the monitoring data collected as part of the IOCC.
    • Date: 2022 to present
  10. Collection

    Data from: Ocean Surface Salinity Response to Atmospheric River Precipitation in the California Current System

    • Oceanic and atmospheric measurements, reanalysis and modeled outputs in the California Current System.
    • Date: 1992 to 2019
  11. Collection

    Data from: Unexpected failure of regional marine cloud brightening in a warmer world

    • Marine cloud brightening simulation output generated using the Community Earth System Model (CESM) version 2.2 described in Wan et al., (submitted).
    • Date: 2022-04 to 2023-04
  12. Collection

    Data from: QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations

    • The data set contains the files necessary to recalculate/reproduce the unbinding rates of ligands for the model host-guest systems and Hsp90-inhibitor complexes in the paper "QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations."
    • Date: 2021 to 2023
  13. Collection

    Data from: Commitment Problems or Bidding Wars? Rebel Fragmentation as Peace Building

    • This project uses an original dataset of field commanders in post-civil war Tajikistan to show that warlords from the victorious faction were as likely to be purged from the ruling coalition in a given year as warlords from the defeated faction.
    • Date: 2012
  14. Collection

    A dataset of chromosomal instability gene signature scores in normal and cancer cells from the human breast

    • These data show the relative amount of chromosomal instability (CIN) in a diverse array of human breast cell types, including non-transformed mammary epithelial cells as well as cancer cell lines. Additional data is also provided from human embryonic and mesenchymal stem cells.
    • Date: 2018 to 2023
  15. Collection

    Data from: A climate vulnerability assessment of cultural heritage in the La Fortaleza and San Juan National Historic Site World Heritage Site

    • Inundation threats related to climate change in San Juan Bay, Puerto Rico, which includes the World Heritage Site of La Fortaleza and San Juan National Historic Site. The map contains separate layers for sea level rise from NOAA's Sea Level Rise Viewer Tool, and layers for other relevant variables produced by the Coastal Resilience Evaluation and Siting Tool (CREST), acquired in Spring 2023.
    • Date: 2023-04-03 to 2023-06-09
  16. Collection

    Aerosol Microphysics and Chemical Measurements at Mt. Soledad and Scripps Pier during the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) from February 2023 to February 2024

    • Aerosol Microphysics and Chemical Measurements at Mt. Soledad and Scripps Pier during the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) from February 2023 to February 2024.
    • Date: 2023-02-15 to 2024-02-14
  17. Collection

    Data from: Overcrowded Housing Reduces COVID-19 Mitigation Measures and Lowers Emotional Health Among San Diego Refugees from September to November of 2020

    • Data for the present cross-sectional study were collected between September 2020 and November 2020 as part of PANA’s biannual community survey to address the primary research question: What is the association between housing and COVID-19 vulnerability?
    • Date: 2020-09 to 2020-11
  18. Collection

    Data from: Observations of Surface Gravity Wave Spectra from Moving Platforms

    • This collection consists of ocean and atmospheric observations (e.g., waves and winds) collected off the coast of San Diego and San Francisco California from instrumented Boeing Liquid Robotics SV3 Wave Gliders.
    • Date: 2020-09-01 to 2021-11-04
  19. Collection

    Data from: Cobble Tracking Observations at Torrey Pines State Beach, CA, USA

    • Wave data and cobble locations at Torrey Pines State Beach, San Diego, California.
    • Date: 2021 to 2023
  20. Collection

    Data from: Machine learning for daily forecasts of Arctic sea-ice motion: an attribution assessment of model predictive skill

    • MATLAB R2021b, Python and bash files used for data download and analysis. Processed data and MATLAB R2021b plotting files.
    • Date: 1989 to 2021
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