Browse By Collection | Library Digital Collections

Collection

Data from: Is the Mediterranean the New Rio Grande? U.S. and E.U. Immigration Pressures in the Long Run

This project uses a gravity-style model to project bilateral migration flows for the next 40 years. It shows that Europe—unlike the US—will face substantial, demographically driven migration pressures from across the Mediterranean for decades to come.
Date: 2016-01-01 to 2016-05-31

Collection

Data from: Latent profile analysis of objectively measured sleep, physical activity, and sedentary time and associations with health in adult women

This dataset represents the analysis variables for a group of 372 women collected at 4 different sites across the United States, including sleep quality, physical activity and sedentary behaviors.
Date: 2012-10-10 to 2014-01-13

Collection

Data from: Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo

Microscopy data relative to measurements of cell sizes in early embryos of 3 echinoderm species (Patiria miniata, Lytechinus pictus and Patiriella regularis) and to lineage tracing experiments in the sea star Patiria miniata.
Date: 2018 to 2022

Collection

Data from: Machine learning for daily forecasts of Arctic sea-ice motion: an attribution assessment of model predictive skill

MATLAB R2021b, Python and bash files used for data download and analysis. Processed data and MATLAB R2021b plotting files.
Date: 1989 to 2021

Collection

Data from: Measuring Estuarine Total Exchange Flow from Discrete Observations

Matlab code for calculating Total Exchange Flow (TEF) using data from the three estuary models. Calculation scripts for five different methods as described in “Measuring Estuarine Total Exchange Flow from Discrete Observations” are included.
Date: 2005 to 2012

Collection

Data from: Measuring Seafloor Strain with an Optical Fiber Interferometer

A 95.5 day long record of earth strain collected on the seafloor 95 km offshore Oregon was collected (ocean depth was 1910 m). The instrument used was a 200-m-long optical fiber cable, stretched between two anchors in an east-west line.
Date: 2015-10-24 to 2016-01-27

Collection

Data from: Mechanisms of heat flux across the Southern Greenland continental shelf in 1/10° and 1/12° ocean/sea ice simulations

Volume and heat fluxes across the Greenland continental shelf in two eddy-active coupled ocean/sea-ice simulations.
Date: 2005 to 2009

Collection

Data from: Mesopelagic fishes dominate otolith record of past two millennia in the Santa Barbara Basin

Two data files for Santa Barbara Basin, (1) individual fossil otolith data (geometric measurements, shape characteristics and elemental composition); (2) time series of otolith deposition rate and climate proxies.
Date: 1993 to 2015

Collection

Data from: Metabolic rates in the Agua Hedionda Lagoon during the 2020 Southern California red tide event

A time series from autonomous SeapHOx sensors (pH, dissolved oxygen (DO), salinity, temperature, and pressure) in the Agua Hedionda Lagoon, captured baseline conditions in 2018 and the effects of a massive red tide occurring along the Southern & Baja California coast during the spring of 2020.
Date: 2018-11-02 to 2018-12-24 and 2020-02-05 to 2020-06-14

Collection

Data from: Multi-Source Feature Fusion for Object Detection Association in Connected Vehicle Environments

This dataset contains labeled virtual and real-world examples of object detection association in a connected vehicle environment.
Date: 2020 to 2022

Collection

Data from: Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning

The kinetic rate constants of four biochemically relevant ligand-receptor systems were estimated and described in a publication. This collection includes input files, output files, trajectories, and statistics associated with the study.
Date: 2013 to 2015

Collection

Data from: Multiscale Modeling Shows How 2'-deoxy-ATP Rescues Ventricular Function in Heart Failure

Molecular dynamics simulations of myosin (1QVI) carried out with either ATP or dATP bound from the manuscript "Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure"
Date: 2020 to 2022

Collection

Data from: Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase

The input and output Brownian dynamics trajectories associated with this study.
Date: 2017 to 2020

Collection

Data from: Near-Inertial Surface Currents Around Islands

This collection contains numerical model output from a linear 1.5-layer reduced gravity model. These simulations are presented in Siegelman et al. (2022), which examines the behavior of near-inertial surface currents around circular islands.
Date: 2019 to 2021

Collection

Data from: NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation

This collection contains trajectory and molecular dynamics simulation output data for NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation.
Date: 2022-01-01 to 2024-04-01

Collection

Data from: North American Monsoon Impacts Southern California’s Coastal Low Clouds

This collection contains data from "North American Monsoon Impacts Southern California’s Coastal Low Clouds" (Clemesha et al. 2023). Data files include: satellite-derived Coastal Low Cloudiness (CLC) for May - September 1996 - 2020, seasonal cycle fit of CLC used to create daily anomalies, San Diego airport cloud cover, precipitable water content from 850 to 300 hPa from observations in southern and northern California, a previously published single column model radiative scheme with input and outputs files used in this study.
Date: May through September, 1996 to 2020

Collection

Data from: Observations and Modeling of Ocean Circulation in the Seychelles Plateau Region

This collection contains raw and processed data from a variety of velocity, pressure, temperature and salinity sensors deployed from December 2016 to March 2019 over the Seychelles Plateau and a subset of an Ocean General Circulation POP model from the South Tropical Indian Ocean.
Date: Data: 2015 to 2019; Model: 1993 to 2009

Collection

Data from: Observations and Numerical Simulations of the Onset and Growth of Langmuir Circulations

This collection contains data from observations and numerical simulations of Langmuir circulations, along with the relevant routines to generate figures in Andriatis et al. 2024.
Date: 2020-11-04 to 2020-11-25

Collection

Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
Date: 2015-09-18 to 2015-09-20

Collection

Data from: Observations of strongly modulated surface wave and wave breaking statistics at a submesoscale front

This collection contains data presented in Vrecica et al 2021, including an overview of a submesoscale front, wave statistics, and wave breaking statistics.
Date: 2018-04-17

Collection

Data from: Observations of surface cobbles at two southern California beaches

Date: 2008 to 2018

Collection

Data from: Observations of Surface Gravity Wave Spectra from Moving Platforms

This collection consists of ocean and atmospheric observations (e.g., waves and winds) collected off the coast of San Diego and San Francisco California from instrumented Boeing Liquid Robotics SV3 Wave Gliders.
Date: 2020-09-01 to 2021-11-04

Collection

Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
Date: 2015-01 to 2015-03

Collection

Data from: Observing Ocean-Atmosphere Fluxes From Autonomous Surface Vehicles

This collection contains raw and processed data collected from the Research platform FLIP and by two Wave Gliders during the ONR funded Langmuir Cell DRI experiment conducted in Spring 2017 off the coast of Southern California.
Date: 2017-03-21 to 2017-04-06

Collection

Data from: Ocean Surface Salinity Response to Atmospheric River Precipitation in the California Current System

Oceanic and atmospheric measurements, reanalysis and modeled outputs in the California Current System.
Date: 1992 to 2019

Collection

Data from: Overcrowded Housing Reduces COVID-19 Mitigation Measures and Lowers Emotional Health Among San Diego Refugees from September to November of 2020

Data for the present cross-sectional study were collected between September 2020 and November 2020 as part of PANA’s biannual community survey to address the primary research question: What is the association between housing and COVID-19 vulnerability?
Date: 2020-09 to 2020-11

Collection

Data from: pH-Dependent Surface Interactions and Structural Changes for DNA Adsorbed on TiO2 Particle Surfaces Has Implications for Environmental DNA

This collection contains data used in publication and is linked with figure numbers. Data contains ATR-FTIR spectroscopic data, pH measurements and UV-vis measurements.
Date: 2023-08 to 2025-05

Collection

Data from: Plankton energy flows using a global size-structured and trait-based model

This collection includes a global 20 year (1990-2009) climatology of diagnostic and prognostic variables for the Size-based Plankton Ecological TRAits (MARBL-SPECTRA) model.
Date: 1990 to 2009

Collection

Data from: Prediction of Threonine-Tyrosine Kinase Receptor-Ligand Unbinding Kinetics with Multiscale Milestoning and Metadynamics

Heat shock protein 90 (HSP90) and threonine tyrosine kinase (TTK) simulation enabled estimation of kinetic rates (SEEKR) calculations using both steered molecular dynamics and metadynamics.
Date: 2022-05 to 2024-06

Collection

Data from: QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations

The data set contains the files necessary to recalculate/reproduce the unbinding rates of ligands for the model host-guest systems and Hsp90-inhibitor complexes in the paper "QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations."
Date: 2021 to 2023

Collection

Data from: Quantifying Bioluminescent Light Intensity in Breaking Waves using Numerical Simulations

This collection features velocity, volume fraction, and velocity gradient data interpolated onto a uniform Cartesian grid, along with Basilisk code for simulating breaking waves and Julia code for simulating bioluminescence.
Date: 2024

Collection

Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
Date: 2015-03 to 2018-09

Collection

Data from: Quantitative regional observations of the geological influence on primary sandy beaches

The dataset includes mapped beach elevations, and gravel/bedrock locations in GeoTIFF format.
Date: 2017-10-01 to 2021-03-31

Collection

Data from: Readily Available Primary Aminoboranes as Powerful Reagents for Aldimine Synthesis

Date: 2017 to 2018

Collection

Data from: Real-time ground motion records of coastal cliff failures in San Diego County, California

Data from in situ geophysical sensors (tilt, creep, and displacement), weather and environmental records (temperature, precipitation, and wave height), and tides (height), collected in San Diego County (San Elijo State Beach and Del Mar) in 2023 and 2024.
Date: 2023 to 2025

Collection

Data from Scripps Research Expeditions 1953-2005

Data and documents from Scripps Institution of Oceanography research vessel expeditions from 1953-2005, including geophysical, water column, and sea surface measurements.
Date: 1953 to 2005

Collection

Data from: Seasonal cycle and annual reversal of the Somali Current in an eddy-resolving global ocean model

The dataset includes a subset of model output from a global 0.1-deg CORE-II forced POP simulation near the region of the Arabian Sea, supporting the Journal of Geophysical Research: Oceans article with the same name.
Date: 2005 to 2009

Collection

Data from: SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine

This data set contains the files necessary to recreate the results in the paper "SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine".
Date: 2020-08 to 2022-03

Collection

Data from: Selectivity and ranking of tight-binding JAK-STAT inhibitors using Markovian milestoning with Voronoi tessellations

The data contains the Simulation Enabled Estimation of Kinetic Rates (SEEKR) simulations for the JAK2 and JAK3-ligand complexes with instructions to compute the residence times of the ligands in these complexes.
Date: 2020 to 2022

Collection

Data from: Sensitivities of the West Greenland Current to Greenland Ice Sheet Meltwater in a Mesoscale Ocean/Sea Ice Model

Diagnostics from a high-resolution global coupled ocean/sea-ice (POP/CICE5) simulations. Diagnostics are calculated based on 1992-1993 for three meltwater forcing experiments: a control run, surface forcing, and spread forcing.
Date: Model creation: 2016 to 2023. Model representation: 1992 to 1993

Collection

Data from: Short-term variability of atmospheric helium revealed through a cryo-enrichment method

He/N2 observations from Scripps Pier and supplementary O2/N2, Ar/N2 and CO2 data.
Date: 2022-04-23 to 2022-05-25

Collection

Data from: Singlet Carbenes are Stereoinductive Main Group Ambiphiles

All output files for reactants, products, reaction intermediates, and transition states involved in insertion of chiral cyclic(alkyl)(amino)carbenes to E-H bonds. Additionally, output files from the simulation of NMR spectra for select products.
Date: 2024-05 to 2025-01

Collection

Data from: Soft robotic steerable micro-catheter for the endovascular treatment of cerebral disorders

Results of analysis and experiment on steerable microcatheters and microguidewires, including video and raw data.
Date: 2017-01-01 to 2021-06-30

Collection

Data from: Southern California Coastal Response to the 2015-16 El Niño

Airborne lidar datasets collected on 6-October-2015 and 22-March-2016, and processed into 1-m resolution digital elevation models.
Date: 2015 to 2016

Collection

Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture

This collection includes the remote sensing dataset recorded at Çatalhöyük, Turkey, between 2012-2017. The deterioration of earthen architecture through time was assessed by comparing these 3-D data and with geo spatial methods.
Date: 2012 to 2017

Collection

Data from: Spatial and temporal structure of the fog life cycle over Atlantic Canada and the Grand Banks

This collection contains the ocean and atmospheric data collected over 71 years over Atlantic Canada and the Grand Banks that was used to generate the figures from Formby-Fernandez et. al (2024).
Date: 1950 to 2020

Collection

Data from: Spectral Refraction Modeling of Waves around the Steep Reef at Palau

This collection contains observations of bulk wave statistics from 10 sites around the island chain of Palau and wave estimates from a spectral refraction model.
Date: 2013 to 2023

Collection

Data from: Structural basis for ligand modulation of the CCR2 conformational landscape

This collection contains the molecular dynamics trajectories and analysis scripts used in the paper “Structural basis for ligand modulation of the CCR2 conformational landscape”.
Date: 2017 to 2018

Collection

Data from: Subaerial Profiles at Two Beaches: Equilibrium and Machine Learning

This collection contains observations of beach elevation and model derived wave statistics from two locations in San Diego County: Torrey Pines State Beach and Black’s Beach (La Jolla, CA).
Date: 2015-01 to 2023-12

Collection

Data from: Superconductivity Found in Meteorites

This data details the discovery and analysis of superconducting material in two meteorites. These are the first superconducting materials found in extraterrestrial samples and the superconducting phases are characterized as alloys of lead, tin and indium.
Date: 2016 to 2019

Refine your search

Browse by Collection: UCSD Research Data Collections

Search Results