Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Collection

    Aerosol Particle Chemical and Physical Measurements on the 2015, 2016, 2017, and 2018 North Atlantic Aerosols and Marine Ecosystems Study (NAAMES) Research Cruises

    • Size distributions, organic functional groups, and non-refractory and single particle composition of North Atlantic marine aerosol particles
    • Date: 2015-11-06 to 2015-11-30; 2016-05-11 to 2016-06-05; 2017-08-30 to 2017-09-24; 2018-03-20 to 2018-04-13
  2. Collection

    Data from: Measuring Seafloor Strain with an Optical Fiber Interferometer

    • A 95.5 day long record of earth strain collected on the seafloor 95 km offshore Oregon was collected (ocean depth was 1910 m). The instrument used was a 200-m-long optical fiber cable, stretched between two anchors in an east-west line.
    • Date: 2015-10-24 to 2016-01-27
  3. Collection

    Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

    • CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
    • Date: 2015-09-18 to 2015-09-20
  4. Collection

    Data from: Electrostatic interactions as mediators in the allosteric activation of PKA RIalpha

    • Molecular dynamics input files, trajectories and analysis scripts used in the paper "Electrostatic interactions as mediators in the allosteric network of PKA RIalpha".
    • Date: 2015-09-15
  5. Collection

    Data from: Drift-Corrected Seafloor Vertical Deformation at Axial Seamount 2013-2014

    • Data from a Self-Calibrating Pressure Recorder (SCPR) deployed at Axial Seamount from 2013 to 2015. This is seafloor height change (cm), converted from pressure (kPa), corrected for ocean tides and pressure gauge drift.
    • Date: 2015-08-25
  6. Collection

    Data from: Airborne observations of shoaling and breaking internal waves

    • This collection contains data presented in: "Airborne observations of shoaling and breaking internal waves." This includes a mosaic of sea surface temperature, spectral analysis of temperature structures, surface velocities, and areas undergoing breaking.
    • Date: 2015-08-01
  7. Collection

    Research based PAM50 Signature from the Women's Healthy Eating and Living (WHEL) Study

    • PAM50 subtype calls, ROR risk groups and scores are provided.
    • Date: 2015-07-29 to 2015-11-06
  8. Collection

    An annotated checklist of the bees (Hymenoptera: Anthophila) of San Diego County, California

    • This database represents an ongoing survey to document all the bee species that occur within the bounds of San Diego County. As this project is still ongoing, the database will be updated periodically with additions and/or corrections.
    • Date: July 2015 to August 2020
  9. Collection

    Lawrence Livermore National Laboratory (LLNL) Open Data Initiative

    • Lawrence Livermore National Laboratory’s Data Science Institute shares some of LLNL’s challenging and unique data sets with the larger data science community through its Open Data Initiative.
    • Date: July 2015 to present
  10. Collection

    EarthCube User Scenario Collection

    • A collection of earth scientists' descriptions of their cyberinfrastructure needs, developed for the NSF EarthCube program.
    • Date: 2015-05-01 to 2016-09-01
  11. Collection

    Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

    • This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
    • Date: 2015-03 to 2018-09
  12. Collection

    Data from: A Living Vector Field Reveals Constraints on Galactose Network Induction in Yeast

    • To study how cellular traits produce population phenotypes, we built living vector fields from single-cell timecourses of the proteins Gal3p and Gal1p as yeast switched to galactose from other nutrients. This collection has data and analysis codes.
    • Date: 2015 to 2016
  13. Collection

    Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization

    • This collection integrates highly accurate 3D snapshots of Bodie's historic buildings before/after disturbance, or post-restoration, and other 3D geospatial data that were used to monitor and digitally preserve important cultural resources at Bodie California State Historic Park.
    • Date: 2015 and 2020
  14. Collection

    Data from: Episodic Southern Ocean heat loss and its mixed layer impacts revealed by the furthest south multi-year surface flux mooring

    • This dataset contains Quality Controlled daily mean air-sea heat flux estimates from the NSF Ocean Observatories Initiative Southern Ocean mooring site for the period 2015 to 2017, as used in the analysis of Ogle et al. 2018 (doi:10.1029/2017GL076909)
    • Date: 2015 to 2017
  15. Collection

    Data from: Internal tide structure and temporal variability on the reflective continental slope of southeastern Tasmania

    • This collection contains in situ data (from 3 moorings and 1 CTD/LADCP station) from the Tasman Tidal Dissipation Experiment (T-TIDE) that was analyzed in Marques et al. (2020).
    • Date: From 2015-01 to 2015-03
  16. Collection

    Data from: Observations and Modeling of Ocean Circulation in the Seychelles Plateau Region

    • This collection contains raw and processed data from a variety of velocity, pressure, temperature and salinity sensors deployed from December 2016 to March 2019 over the Seychelles Plateau and a subset of an Ocean General Circulation POP model from the South Tropical Indian Ocean.
    • Date: Data: 2015 to 2019; Model: 1993 to 2009
  17. Collection

    Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

    • In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
    • Date: 2015-01 to 2015-03
  18. Collection

    Data from: Southern California Coastal Response to the 2015-16 El Niño

    • Airborne lidar datasets collected on 6-October-2015 and 22-March-2016, and processed into 1-m resolution digital elevation models.
    • Date: 2015 to 2016
  19. Collection

    Native bees in San Diego's coastal sage scrub reserves and fragments, surveyed in 2015 and 2016

    • A dataset of bees and plants in coastal sage scrub reserves and habitat fragments in coastal San Diego County, collected by PhD student Keng-Lou James Hung in 2015 and 2016.
    • Date: 2015 to 2016
  20. Collection

    Plant-pollinator interaction networks in coastal sage scrub reserves and fragments in San Diego

    • Data here describe the interactions between plants and putative pollinators in large natural reserves (area > 500 ha; n = 6) and small habitat fragments (area < 60 ha; n = 6) of coastal sage scrub habitat.
    • Date: 2015 to 2016
  21. Collection

    The Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study

    • Observational data and analysis from the NSF-funded Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study.
    • Date: 2015
  22. Collection

    Training image data for: Environmental and ecological drivers of harmful algal blooms in the Southern California Bight

    • The datasets include example images of marine protists and copepods. The images were collected by the Scripps Plankton Camera (http://spc.ucsd.edu/), located at the end of the Scripps Pier, La Jolla, CA, at the tide-dependent depth of approximately 3-4 m.
    • Date: 2015 to 2019
  23. Collection

    Aerosol Composition and Size Measurements at Fresno and Fontana

    • Non-refractory aerosol particle and refractory black carbon mass concentrations, size distributions, and coatings along with single particle compositions and organic aerosol functional groups in Fresno and Fontana.
    • Date: 2014-12-19 to 2015-01-13 (Fresno); 2015-07-04 to 2015-07-28 (Fontana)
  24. Collection

    Stack Gas and Plume Aerosol Measurements from Renewable Diesel and Ultra Low Sulfur Diesel in At-Sea Operation of Research Vessel Robert Gordon Sproul

    • Gas and particle emissions from the R/V Sproul were measured in September 2014 and 2015 using two sets of real-time instruments, with gas analyzers sampling directly from the stack and particle instruments intercepting the “fresh” plume, directly after emission into the atmosphere.
    • Date: 2014-09-29 to 2015-12-05
  25. Collection

    Data from: Allostery through the Computational Microscope: cAMP Activation of a Canonical Signalling Domain

    • This collection contains the molecular dynamics trajectories scripts and models used in the paper “Allostery through the computational microscope: cAMP activation of a canonical signalling domain”.
    • Date: 2014-08-24
  26. Collection

    Ambient and Sea Sweep Generated Aerosol Measurements in the North Atlantic in May-June 2014 during WACS2 (Western Atlantic Climate Study 2)

    • Measurements of ambient and seawater generated marine aerosol particle chemical and physical properties in the North Atlantic in May-June 2014.
    • Date: 2014-05-20 to 2014-06-05
  27. Collection

    Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) and Global Ocean Biogeochemistry (GO-BGC) Biogeochemical-Argo Float Data Archive

    • Data from biogeochemical Argo profiling floats within the SOCCOM and GO-BGC programs. Additional floats outside of these programs may also be included, provided their data-streams are managed by the Monterey Bay Aquarium Research Institute (MBARI).
    • Date: 2014-03-27 to present
  28. Collection

    Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) Float Data Archive

    • Biogeochemical profiling floats in the Southern Ocean deployed by the SOCCOM program.
    • Date: 2014-03-27 to 2022-05-19
  29. Collection

    California Local Tax Ballot Measures

    • Public records associated with most of the local tax measures put before California voters since 1986, including excerpts from official voter information guides and sample ballots, and proposed ordinance text, where available.
    • Date: 2014 to 2020
  30. Collection

    Data from: Calibrated absolute seafloor pressure measurements for geodesy in Cascadia

    • Raw and corrected pressure data from campaign-style surveys of absolute calibrated sea pressure using an Absolute Self-Calibrating Pressure Recorder (ASCPR) in the Cascadia subduction zone from 2014 to 2017.
    • Date: 2014 to 2017
  31. Collection

    Data from: Climate change intensification of horizontal water vapor transport in CMIP5

    • The dataset contains simulations of water vapor transport from 22 CMIP5 models including the historical, RCP4.5, and RCP8.5 runs.
    • Date: 2014 to 2015
  32. Collection

    Data from: Effect of atmospheric forcing resolution on simulated mixed layer depth in the North Pacific

    • This dataset contains daily output from two eddying ocean simulations in the North Pacific. The two experiments have the same configuration except for the atmospheric forcing resolution.
    • Date: 2014 to 2018
  33. Collection

    dataMares: Ecosystem Dynamics

    • The datasets in this collection are used for analyses on relationships between different ecosystems, as well as humans and the habitats surrounding us, to elucidate the impact that anthropogenic activities have on the environment.
    • Date: 2014 to present
  34. Collection

    Genotype data from: NIDA Center for GWAS in Outbred rats

    • This collection contains genotype data collected as part of the NIDA Center for GWAS in Outbred rats and more than 10 additional research projects that use N/NIH heterogeneous stock (HS) outbred rats.
    • Date: 2014 to present
  35. Collection

    The Center for GWAS in Outbred Rats Database (C-GORD)

    • C-GORD (The Center for GWAS in Outbred Rats Database) provides access to the data generated by the NIDA center for genetic studies of drug abuse and other behaviors as well as physiological phenotypes in N/NIH heterogeneous stock (HS) rats; the data is collected by more than 15 research projects.
    • Date: 2014 to present
  36. Collection

    Autonomous Underwater Vehicle (AUV)-borne velocity measurements collected over a fringing coral reef near Makua Beach, Oahu, Hawai'i

    • This collection contains raw data from a REMUS-100 Autonomous Underwater Vehicle (AUV) deployed in September 2013 over a fringing coral reef near Makua Beach, Oahu, Hawai'i.
    • Date: 2013-09-06 to 2013-09-08
  37. Collection

    Oceanographic data taken over a fringing coral reef near Makua Beach, Oahu, Hawai'i (2013)

    • Raw and averaged velocity, temperature, salinity, and pressure data from a coral reef in southwestern Oahu, Hawai'i.
    • Date: 2013-09-06 to 2013-09-30
  38. Collection

    Carbonaceous Aerosol Particle Measurements from Southeast Atmosphere Study (SOAS) 2013 in Look Rock, Tennessee, USA

    • HR-Tof-AMS submicon mass spectra for ensemable mass and single paritcles (by LS), Fourier Transform Infrared (FTIR) spectroscopic analysis of organic functional groups of submicron particles,and size distributions at Look Rock during SOAS 2013.
    • Date: 2013-06-01 to 2013-07-18
  39. Collection

    The Bangarang Project

    • Data associated with the "Bangarang Project", Eric Keen's dissertation study on the foraging ecology of whales in the Kitimat Fjord System, British Columbia.
    • Date: 2013-05 to 2015-09
  40. Collection

    Data from: Instrumented Wave Gliders for Air-Sea Interaction and Upper Ocean Research

    • This collection regroups data sets collected during four major field programs from 2013 to 2020 from a fleet of Wave Gliders specifically designed and instrumented for air-sea interaction and upper ocean observations by the Air-Sea Interaction Laboratory at Scripps Institution of Oceanography.
    • Date: 2013 to 2020
  41. Collection

    Data from: Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning

    • The kinetic rate constants of four biochemically relevant ligand-receptor systems were estimated and described in a publication. This collection includes input files, output files, trajectories, and statistics associated with the study.
    • Date: 2013 to 2015
  42. Collection

    Observations of Solar Analog Field Stars from the Hamilton Echelle Spectrograph at Lick Observatory

    • This observing program used the Hamilton Echelle Spectrograph on the three meter Shane telescope at Lick Observatory to obtain high resolution spectroscopic observations of 211 solar analog field stars.
    • Date: 2013 to 2014
  43. Collection

    Data from: Latent profile analysis of objectively measured sleep, physical activity, and sedentary time and associations with health in adult women

    • This dataset represents the analysis variables for a group of 372 women collected at 4 different sites across the United States, including sleep quality, physical activity and sedentary behaviors.
    • Date: 2012-10-10 to 2014-01-13
  44. Collection

    Data from: The relations between sleep, time of physical activity, and time outdoors among adult women

    • Exploring the relation between physical activity, time spent outdoors and sleep quality and duration.
    • Date: 2012-10-10 to 2014-01-13
  45. Collection

    Measurements of Generated and Ambient Marine Aerosol Particles in August 2012 on board the R/V Ronald H. Brown during the Western Atlantic Climate Study (WACS)

    • Measurements of generated marine aerosol particle physical and chemical properties.
    • Date: 2012-08-19 to 2012-08-27
  46. Collection

    Aerosol and Cloud Observations in La Jolla, CA, in May-June 2011 during SOLEDAD (Stratocumulus Observations of Los-Angeles Emissions Derived Aerosol-Droplets)

    • Measurements of polluted marine aerosol and cloud droplet chemical and physical properties at Mt. Soledad and Scripps Pier in La Jolla, California.
    • Date: 2012-05-01 to 2012-06-18
  47. Collection

    100 Island Challenge Collection

    • The 100 Island Challenge is a collaborative effort to describe the variation of coral reefs from across the globe. We combine classical field surveys with innovative imaging and data technologies to archive reefs digitally and watch how populations change through time.
    • Date: 2012 to present
  48. Collection

    Center for Environmental Imaging Collection

    • The Center for Environmental Imaging (CEI) is an effort to digitally archive imagery of the natural world. This collection includes image datasets from a diversity of projects and environmental habitats.
    • Date: 2012 to present
  49. Collection

    Data from: Carbonic Anhydrases, EPF2 and a Novel Protease Mediate CO2 Control of Stomatal Development

    • RNA-Seq experiments analyzing the Arabidopsis response to low and elevated carbon dioxide growing conditions were conducted to capture early signaling events as seedlings were adapting to stress.
    • Date: 2012 to 2013
  50. Collection

    Data from: Commitment Problems or Bidding Wars? Rebel Fragmentation as Peace Building

    • This project uses an original dataset of field commanders in post-civil war Tajikistan to show that warlords from the victorious faction were as likely to be purged from the ruling coalition in a given year as warlords from the defeated faction.
    • Date: 2012