Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Collection

    Aerosol Composition and Size Measurements at Fresno and Fontana

    • Non-refractory aerosol particle and refractory black carbon mass concentrations, size distributions, and coatings along with single particle compositions and organic aerosol functional groups in Fresno and Fontana.
    • Date: 2014-12-19 to 2015-01-13 (Fresno); 2015-07-04 to 2015-07-28 (Fontana)
  2. Collection

    Data from: A Living Vector Field Reveals Constraints on Galactose Network Induction in Yeast

    • To study how cellular traits produce population phenotypes, we built living vector fields from single-cell timecourses of the proteins Gal3p and Gal1p as yeast switched to galactose from other nutrients. This collection has data and analysis codes.
    • Date: 2015 to 2016
  3. Collection

    Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization

    • This collection integrates highly accurate 3D snapshots of Bodie's historic buildings before/after disturbance, or post-restoration, and other 3D geospatial data that were used to monitor and digitally preserve important cultural resources at Bodie California State Historic Park.
    • Date: 2015 and 2020
  4. Collection

    Data from: Episodic Southern Ocean heat loss and its mixed layer impacts revealed by the furthest south multi-year surface flux mooring

    • This dataset contains Quality Controlled daily mean air-sea heat flux estimates from the NSF Ocean Observatories Initiative Southern Ocean mooring site for the period 2015 to 2017, as used in the analysis of Ogle et al. 2018 (doi:10.1029/2017GL076909)
    • Date: 2015 to 2017
  5. Collection

    Data from: Internal tide structure and temporal variability on the reflective continental slope of southeastern Tasmania

    • This collection contains in situ data (from 3 moorings and 1 CTD/LADCP station) from the Tasman Tidal Dissipation Experiment (T-TIDE) that was analyzed in Marques et al. (2020).
    • Date: From 2015-01 to 2015-03
  6. Collection

    Data from: Observations and Modeling of Ocean Circulation in the Seychelles Plateau Region

    • This collection contains raw and processed data from a variety of velocity, pressure, temperature and salinity sensors deployed from December 2016 to March 2019 over the Seychelles Plateau and a subset of an Ocean General Circulation POP model from the South Tropical Indian Ocean.
    • Date: Data: 2015 to 2019; Model: 1993 to 2009
  7. Collection

    Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

    • In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
    • Date: 2015-01 to 2015-03
  8. Collection

    Data from: Southern California Coastal Response to the 2015-16 El Niño

    • Airborne lidar datasets collected on 6-October-2015 and 22-March-2016, and processed into 1-m resolution digital elevation models.
    • Date: 2015 to 2016
  9. Collection

    Data from: Subaerial Profiles at Two Beaches: Equilibrium and Machine Learning

    • This collection contains observations of beach elevation and model derived wave statistics from two locations in San Diego County: Torrey Pines State Beach and Black’s Beach (La Jolla, CA).
    • Date: 2015-01 to 2023-12
  10. Collection

    Energy density and content of forage species in the California Current Ecosystem

    • Energy density and content of forage species in the California Current Ecosystem were determined from samples collected in Southern and Central California during 2015-2019.
    • Date: 2015 to 2019
  11. Collection

    Native bees in San Diego's coastal sage scrub reserves and fragments, surveyed in 2015 and 2016

    • A dataset of bees and plants in coastal sage scrub reserves and habitat fragments in coastal San Diego County, collected by PhD student Keng-Lou James Hung in 2015 and 2016.
    • Date: 2015 to 2016
  12. Collection

    Plant-pollinator interaction networks in coastal sage scrub reserves and fragments in San Diego

    • Data here describe the interactions between plants and putative pollinators in large natural reserves (area > 500 ha; n = 6) and small habitat fragments (area < 60 ha; n = 6) of coastal sage scrub habitat.
    • Date: 2015 to 2016
  13. Collection

    The Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study

    • Observational data and analysis from the NSF-funded Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study.
    • Date: 2015
  14. Collection

    Training image data for: Environmental and ecological drivers of harmful algal blooms in the Southern California Bight

    • The datasets include example images of marine protists and copepods. The images were collected by the Scripps Plankton Camera (http://spc.ucsd.edu/), located at the end of the Scripps Pier, La Jolla, CA, at the tide-dependent depth of approximately 3-4 m.
    • Date: 2015 to 2019
  15. Collection

    Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

    • This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
    • Date: 2015-03 to 2018-09
  16. Collection

    EarthCube User Scenario Collection

    • Date: 2015-05-01 to 2016-09-01
  17. Collection

    An annotated checklist of the bees (Hymenoptera: Anthophila) of San Diego County, California

    • This database represents an ongoing survey to document all the bee species that occur within the bounds of San Diego County. As this project is still ongoing, the database will be updated periodically with additions and/or corrections.
    • Date: July 2015 to August 2020
  18. Collection

    Lawrence Livermore National Laboratory (LLNL) Open Data Initiative

    • Lawrence Livermore National Laboratory’s Data Science Institute shares some of LLNL’s challenging and unique data sets with the larger data science community through its Open Data Initiative.
    • Date: July 2015 to present
  19. Collection

    Research based PAM50 Signature from the Women's Healthy Eating and Living (WHEL) Study

    • PAM50 subtype calls, ROR risk groups and scores are provided.
    • Date: 2015-07-29 to 2015-11-06
  20. Collection

    Data from: Airborne observations of shoaling and breaking internal waves

    • This collection contains data presented in: "Airborne observations of shoaling and breaking internal waves." This includes a mosaic of sea surface temperature, spectral analysis of temperature structures, surface velocities, and areas undergoing breaking.
    • Date: 2015-08-01
  21. Collection

    Data from: Drift-Corrected Seafloor Vertical Deformation at Axial Seamount 2013-2014

    • Data from a Self-Calibrating Pressure Recorder (SCPR) deployed at Axial Seamount from 2013 to 2015. This is seafloor height change (cm), converted from pressure (kPa), corrected for ocean tides and pressure gauge drift.
    • Date: 2015-08-25
  22. Collection

    Data from: Electrostatic interactions as mediators in the allosteric activation of PKA RIalpha

    • Molecular dynamics input files, trajectories and analysis scripts used in the paper "Electrostatic interactions as mediators in the allosteric network of PKA RIalpha".
    • Date: 2015-09-15
  23. Collection

    Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

    • CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
    • Date: 2015-09-18 to 2015-09-20
  24. Collection

    Data from: Measuring Seafloor Strain with an Optical Fiber Interferometer

    • A 95.5 day long record of earth strain collected on the seafloor 95 km offshore Oregon was collected (ocean depth was 1910 m). The instrument used was a 200-m-long optical fiber cable, stretched between two anchors in an east-west line.
    • Date: 2015-10-24 to 2016-01-27
  25. Collection

    Aerosol Particle Chemical and Physical Measurements on the 2015, 2016, 2017, and 2018 North Atlantic Aerosols and Marine Ecosystems Study (NAAMES) Research Cruises

    • Size distributions, organic functional groups, and non-refractory and single particle composition of North Atlantic marine aerosol particles
    • Date: 2015-11-06 to 2015-11-30; 2016-05-11 to 2016-06-05; 2017-08-30 to 2017-09-24; 2018-03-20 to 2018-04-13
  26. Collection

    Organic and Elemental Composition of Submicron Aerosol Particles during AWARE at McMurdo Station, Antarctica

    • Fourier Transform Infrared (FTIR) spectroscopic analysis of organic functional groups and X-ray Fluorescence (XRF) of elements in submicron particles at McMurdo Station, Antarctica.
    • Date: 2015-11-29 to 2016-12-19
  27. Collection

    Data from: Carbon and Oxygen Isotopic Fractionation in the Products of Low-Temperature VUV Photodissociation of Carbon Monoxide

    • Carbon and oxygen isotopic fractionation during photodissociation by VUV photons. This Matlab based model only calculates the isotope effect in the self-shielding process and not by any other means (e.g., predissociation). Data files are included.
    • Date: 2016 to 2018
  28. Collection

    Data from: Eddy-induced acceleration of Lagrangian floats

    • Simulated Argo float positions computed using velocities from the Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2) project.
    • Date: 2016 to 2019
  29. Collection

    Data from: Implications of Byproduct Chemistry in Nanoparticle Synthesis

    • Absorption spectra of organic byproducts of tetrachloroaurate reduction by 2-(N-morpholino)ethanesulfonate (MES) were calculated via time-dependent density functional theory. These include small organic molecules, organic MES oligomers, and Au(I) complexes.
    • Date: 2016 to 2018
  30. Collection

    Data from: Is the Mediterranean the New Rio Grande? U.S. and E.U. Immigration Pressures in the Long Run

    • This project uses a gravity-style model to project bilateral migration flows for the next 40 years. It shows that Europe—unlike the US—will face substantial, demographically driven migration pressures from across the Mediterranean for decades to come.
    • Date: 2016-01-01 to 2016-05-31
  31. Collection

    Data from: Superconductivity Found in Meteorites

    • This data details the discovery and analysis of superconducting material in two meteorites. These are the first superconducting materials found in extraterrestrial samples and the superconducting phases are characterized as alloys of lead, tin and indium.
    • Date: 2016 to 2019
  32. Collection

    Radiosonde Data Collected During California Storms

    • Vertical profiles of temperature, humidity, pressure, and wind speed collected during Atmospheric River events in California (2017-2021).
    • Date: 2016 to 2021
  33. Collection

    The CONNected objECT, or CONNECT algorithm applied to National Aeronautics and Space Administration (NASA) Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA V2) - Integrated Water Vapor from 1980 to 2016

    • The CONNected objECT (CONNECT) algorithm is applied to global Integrated Water Vapor Transport (IVT) data from the NASA’s Modern-Era Retrospective Analysis for Research and Applications – Version 2 reanalysis product for the period 1980 to 2016.
    • Date: 2016
  34. Collection

    Data from: Improved Forecast Skill through the Assimilation of Dropsonde Observations from the Atmospheric River Reconnaissance Program

    • This dataset are initial and boundary conditions generated by West-WRF implemented at Scripps Institution of Oceanography of UC San Diego for the Atmospheric River Reconnaissance dropsonde data denial experiments described in Zheng et al. 2021 (JGR). With this dataset, one should be able to repeat the WRF simulations for the NoDROP and WithDROP experiments using WRF V3.9.1.1.
    • Date: 2016-02-14 to 2019-03-01
  35. Collection

    Data from: Contrasting Local and Long-Range-Transported Warm Ice-Nucleating Particles During an Atmospheric River in Coastal California, USA

    • Data, modeling results and analyses supporting research into meteorology and ice nucleating particles.
    • Date: 2016-03-05 to 2018-05-01
  36. Collection

    Data from: Who's Asking? Interviewer Coethnicity Effects in African Survey Data

    • This collection contains the code, data, and output files associated with the article indicated herein.
    • Date: 2012
  37. Collection

    Kastrouli Mycenaean Excavations, Greece 2016

    • Files relevant to the 2016 archaeological excavations of the site Kastrouli, Greece including artifact, photography, geospatial, and other data.
    • Date: 2016-07-20 to 2016-08-03
  38. Collection

    California Imaging FlowCytobot Network (CA IFCB Network)

    • The California Imaging Flowcytobot Network (CA IFCB Network) is a statewide network of automated in situ phytoplankton measurements to aid implementation of an automated early warning system for the detection of potential Harmful Algal Blooms (HABs).
    • Date: 2016 to 2024
  39. Collection

    Center for Western Weather and Water Extremes (CW3E) Surface Meteorological Observational Dataset

    • CW3E Surface Meteorological Observational Dataset: temperature, relative humidity, pressure, precipitation, and soil moisture and temperature at six levels collected every 2 minutes, from 11 stations in the Russian, Yuba, Feather, and Prado watersheds.
    • Date: 2017 to present
  40. Collection

    Data from: A Glimpse through Time and Space: Visualizing Spatial Continuity and History-making at Çatalhöyük, Turkey

    • This collection includes 3-D models, derived 3-D renders, Unity 3D asset packages, a Win64 3-D app, and related metadata that reconstruct both spatially and temporally (4-D) the ‘Shrine’ 10 sequence at the Neolithic site of Çatalhöyük, Turkey
    • Date: 2017 to 2019
  41. Collection

    Data from: Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model

    • This data collection represents all UH8to2 model data used for the publication "Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model". This includes ocean and sea ice characteristics from the 2017-2020 UH8to2 model run.
    • Date: Model representation: 2017 to 2020
  42. Collection

    Data from: Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking

    • All structures and RMSDs used in Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking are provided here.
    • Date: 2017 to 2018
  43. Collection

    Data from: Increasing STEM Undergraduate Participation in Innovative Activities: Field Experimental Evidence

    • Measures of performance on an innovation contest by whether or not participants receive randomized encouragement, and whether participants self-selected into the contest or joined after receiving a monetary inducement for doing so.
    • Date: 2017-01 to 2017-07
  44. Collection

    Data from: Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase

    • The input and output Brownian dynamics trajectories associated with this study.
    • Date: 2017 to 2020
  45. Collection

    Data from: Soft robotic steerable micro-catheter for the endovascular treatment of cerebral disorders

    • Results of analysis and experiment on steerable microcatheters and microguidewires, including video and raw data.
    • Date: 2017-01-01 to 2021-06-30
  46. Collection

    Data from: Structural basis for ligand modulation of the CCR2 conformational landscape

    • This collection contains the molecular dynamics trajectories and analysis scripts used in the paper “Structural basis for ligand modulation of the CCR2 conformational landscape”.
    • Date: 2017 to 2018
  47. Collection

    Data from: Harnessing AI data-driven global weather models for climate attribution: An analysis of the 2017 Oroville Dam extreme atmospheric river

    • This study explores storyline-based climate attribution with AI global weather models, whose short simulation inference times allow one to generate real-time attributions when public attention is heightened. It focuses on the atmospheric river episode of February 2017 that contributed to the Oroville Dam spillway incident in Northern California. Attributions are compared to those from a dynamical model, which represent a plausible "pseudo-reality". This collection contains the data used and generated in the aforementioned study.
    • Date: 2017-02-05 to 2017-02-11
  48. Collection

    Data from: Observing Ocean-Atmosphere Fluxes From Autonomous Surface Vehicles

    • This collection contains raw and processed data collected from the Research platform FLIP and by two Wave Gliders during the ONR funded Langmuir Cell DRI experiment conducted in Spring 2017 off the coast of Southern California.
    • Date: 2017-03-21 to 2017-04-06