Browse by Collection: UCSD Research Data Collections
View current collections below. Click an image or link for a full description.
Page 3 of 5
Search Results
-
Collection
Native bees in San Diego's coastal sage scrub reserves and fragments, surveyed in 2015 and 2016
- A dataset of bees and plants in coastal sage scrub reserves and habitat fragments in coastal San Diego County, collected by PhD student Keng-Lou James Hung in 2015 and 2016.
- Date: 2015 to 2016
-
Collection
Plant-pollinator interaction networks in coastal sage scrub reserves and fragments in San Diego
- Data here describe the interactions between plants and putative pollinators in large natural reserves (area > 500 ha; n = 6) and small habitat fragments (area < 60 ha; n = 6) of coastal sage scrub habitat.
- Date: 2015 to 2016
-
Collection
The Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study
- Observational data and analysis from the NSF-funded Cross-Surfzone/Inner-shelf Dye Exchange (CSIDE) Study.
- Date: 2015
-
Collection
Training image data for: Environmental and ecological drivers of harmful algal blooms in the Southern California Bight
- The datasets include example images of marine protists and copepods. The images were collected by the Scripps Plankton Camera (http://spc.ucsd.edu/), located at the end of the Scripps Pier, La Jolla, CA, at the tide-dependent depth of approximately 3-4 m.
- Date: 2015 to 2019
-
Collection
Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm
- This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
- Date: 2015-03 to 2018-09
-
Collection
EarthCube User Scenario Collection
- A collection of earth scientists' descriptions of their cyberinfrastructure needs, developed for the NSF EarthCube program.
- Date: 2015-05-01 to 2016-09-01
-
Collection
An annotated checklist of the bees (Hymenoptera: Anthophila) of San Diego County, California
- This database represents an ongoing survey to document all the bee species that occur within the bounds of San Diego County. As this project is still ongoing, the database will be updated periodically with additions and/or corrections.
- Date: July 2015 to August 2020
-
Collection
Lawrence Livermore National Laboratory (LLNL) Open Data Initiative
- Lawrence Livermore National Laboratory’s Data Science Institute shares some of LLNL’s challenging and unique data sets with the larger data science community through its Open Data Initiative.
- Date: July 2015 to present
-
Collection
Research based PAM50 Signature from the Women's Healthy Eating and Living (WHEL) Study
- PAM50 subtype calls, ROR risk groups and scores are provided.
- Date: 2015-07-29 to 2015-11-06
-
Collection
Data from: Airborne observations of shoaling and breaking internal waves
- This collection contains data presented in: "Airborne observations of shoaling and breaking internal waves." This includes a mosaic of sea surface temperature, spectral analysis of temperature structures, surface velocities, and areas undergoing breaking.
- Date: 2015-08-01
-
Collection
Data from: Drift-Corrected Seafloor Vertical Deformation at Axial Seamount 2013-2014
- Data from a Self-Calibrating Pressure Recorder (SCPR) deployed at Axial Seamount from 2013 to 2015. This is seafloor height change (cm), converted from pressure (kPa), corrected for ocean tides and pressure gauge drift.
- Date: 2015-08-25
-
Collection
Data from: Electrostatic interactions as mediators in the allosteric activation of PKA RIalpha
- Molecular dynamics input files, trajectories and analysis scripts used in the paper "Electrostatic interactions as mediators in the allosteric network of PKA RIalpha".
- Date: 2015-09-15
-
Collection
Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean
- CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
- Date: 2015-09-18 to 2015-09-20
-
Collection
Data from: Measuring Seafloor Strain with an Optical Fiber Interferometer
- A 95.5 day long record of earth strain collected on the seafloor 95 km offshore Oregon was collected (ocean depth was 1910 m). The instrument used was a 200-m-long optical fiber cable, stretched between two anchors in an east-west line.
- Date: 2015-10-24 to 2016-01-27
-
Collection
Aerosol Particle Chemical and Physical Measurements on the 2015, 2016, 2017, and 2018 North Atlantic Aerosols and Marine Ecosystems Study (NAAMES) Research Cruises
- Size distributions, organic functional groups, and non-refractory and single particle composition of North Atlantic marine aerosol particles
- Date: 2015-11-06 to 2015-11-30; 2016-05-11 to 2016-06-05; 2017-08-30 to 2017-09-24; 2018-03-20 to 2018-04-13
-
Collection
Organic and Elemental Composition of Submicron Aerosol Particles during AWARE at McMurdo Station, Antarctica
- Fourier Transform Infrared (FTIR) spectroscopic analysis of organic functional groups and X-ray Fluorescence (XRF) of elements in submicron particles at McMurdo Station, Antarctica.
- Date: 2015-11-29 to 2016-12-19
-
Collection
Data from: Carbon and Oxygen Isotopic Fractionation in the Products of Low-Temperature VUV Photodissociation of Carbon Monoxide
- Carbon and oxygen isotopic fractionation during photodissociation by VUV photons. This Matlab based model only calculates the isotope effect in the self-shielding process and not by any other means (e.g., predissociation). Data files are included.
- Date: 2016 to 2018
-
Collection
Data from: Eddy-induced acceleration of Lagrangian floats
- Simulated Argo float positions computed using velocities from the Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2) project.
- Date: 2016 to 2019
-
Collection
Data from: Implications of Byproduct Chemistry in Nanoparticle Synthesis
- Absorption spectra of organic byproducts of tetrachloroaurate reduction by 2-(N-morpholino)ethanesulfonate (MES) were calculated via time-dependent density functional theory. These include small organic molecules, organic MES oligomers, and Au(I) complexes.
- Date: 2016 to 2018
-
Collection
Data from: Is the Mediterranean the New Rio Grande? U.S. and E.U. Immigration Pressures in the Long Run
- This project uses a gravity-style model to project bilateral migration flows for the next 40 years. It shows that Europe—unlike the US—will face substantial, demographically driven migration pressures from across the Mediterranean for decades to come.
- Date: 2016-01-01 to 2016-05-31
-
Collection
Data from: Superconductivity Found in Meteorites
- This data details the discovery and analysis of superconducting material in two meteorites. These are the first superconducting materials found in extraterrestrial samples and the superconducting phases are characterized as alloys of lead, tin and indium.
- Date: 2016 to 2019
-
Collection
Radiosonde Data Collected During California Storms
- Vertical profiles of temperature, humidity, pressure, and wind speed collected during Atmospheric River events in California (2017-2021).
- Date: 2016 to 2021
-
Collection
The CONNected objECT, or CONNECT algorithm applied to National Aeronautics and Space Administration (NASA) Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA V2) - Integrated Water Vapor from 1980 to 2016
- The CONNected objECT (CONNECT) algorithm is applied to global Integrated Water Vapor Transport (IVT) data from the NASA’s Modern-Era Retrospective Analysis for Research and Applications – Version 2 reanalysis product for the period 1980 to 2016.
- Date: 2016
-
Collection
Data from: Improved Forecast Skill through the Assimilation of Dropsonde Observations from the Atmospheric River Reconnaissance Program
- This dataset are initial and boundary conditions generated by West-WRF implemented at Scripps Institution of Oceanography of UC San Diego for the Atmospheric River Reconnaissance dropsonde data denial experiments described in Zheng et al. 2021 (JGR). With this dataset, one should be able to repeat the WRF simulations for the NoDROP and WithDROP experiments using WRF V3.9.1.1.
- Date: 2016-02-14 to 2019-03-01
-
Collection
Data from: Contrasting Local and Long-Range-Transported Warm Ice-Nucleating Particles During an Atmospheric River in Coastal California, USA
- Data, modeling results and analyses supporting research into meteorology and ice nucleating particles.
- Date: 2016-03-05 to 2018-05-01
-
Collection
Data from: Who's Asking? Interviewer Coethnicity Effects in African Survey Data
- This collection contains the code, data, and output files associated with the article indicated herein.
- Date: 2012
-
Collection
MITgcm 3-daily global sea surface temperature, ocean currents, nitrate and phytoplankton biomass (1992 - 2016)
- 3-daily averaged sea surface temperature, ocean currents (u, v), nitrate and phytoplankton biomass for the 35 types in the top 10m of the model. Model output has been interpolated from the natural grid onto 1/5th degree resolution.
- Date: May 2016
-
Collection
Kastrouli Mycenaean Excavations, Greece 2016
- Files relevant to the 2016 archaeological excavations of the site Kastrouli, Greece including artifact, photography, geospatial, and other data.
- Date: 2016-07-20 to 2016-08-03
-
Collection
Center for Western Weather and Water Extremes (CW3E) Surface Meteorological Observational Dataset
- CW3E Surface Meteorological Observational Dataset: temperature, relative humidity, pressure, precipitation, and soil moisture and temperature at six levels collected every 2 minutes, from 11 stations in the Russian, Yuba, Feather, and Prado watersheds.
- Date: 2017 to present
-
Collection
Data from: A Glimpse through Time and Space: Visualizing Spatial Continuity and History-making at Çatalhöyük, Turkey
- This collection includes 3-D models, derived 3-D renders, Unity 3D asset packages, a Win64 3-D app, and related metadata that reconstruct both spatially and temporally (4-D) the ‘Shrine’ 10 sequence at the Neolithic site of Çatalhöyük, Turkey
- Date: 2017 to 2019
-
Collection
Data from: Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model
- This data collection represents all UH8to2 model data used for the publication "Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model". This includes ocean and sea ice characteristics from the 2017-2020 UH8to2 model run.
- Date: Model representation: 2017 to 2020
-
Collection
Data from: Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking
- All structures and RMSDs used in Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking are provided here.
- Date: 2017 to 2018
-
Collection
Data from: Increasing STEM Undergraduate Participation in Innovative Activities: Field Experimental Evidence
- Measures of performance on an innovation contest by whether or not participants receive randomized encouragement, and whether participants self-selected into the contest or joined after receiving a monetary inducement for doing so.
- Date: 2017-01 to 2017-07
-
Collection
Data from: Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase
- The input and output Brownian dynamics trajectories associated with this study.
- Date: 2017 to 2020
-
Collection
Data from: Readily Available Primary Aminoboranes as Powerful Reagents for Aldimine Synthesis
- Date: 2017 to 2018
-
Collection
Data from: Soft robotic steerable micro-catheter for the endovascular treatment of cerebral disorders
- Results of analysis and experiment on steerable microcatheters and microguidewires, including video and raw data.
- Date: 2017-01-01 to 2021-06-30
-
Collection
Data from: Structural basis for ligand modulation of the CCR2 conformational landscape
- This collection contains the molecular dynamics trajectories and analysis scripts used in the paper “Structural basis for ligand modulation of the CCR2 conformational landscape”.
- Date: 2017 to 2018
-
Collection
Data from: Exploration and Explanation in Computational Notebooks
- Analysis of approximately 1.25 million Jupyter Notebooks downloaded from public repositories on GitHub in July 2017.
- Date: July 2017
-
Collection
Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation
- Flat composite panel impacts and residual strength testing. Impact damage characterized by X-ray computed tomography and ultrasonic scanning and residual strength testing characterized by digital image correlation.
- Date: 2017-07 to 2017-09
-
Collection
Observations and Model Simulations from the Inner-Shelf Dynamics Experiment (ISDE)
- In-situ observations and model simulations from the Inner-Shelf Dynamics Experiment (ISDE)
- Date: August 2017 to December 2017
-
Collection
Data from: Quantitative regional observations of the geological influence on primary sandy beaches
- The dataset includes mapped beach elevations, and gravel/bedrock locations in GeoTIFF format.
- Date: 2017-10-01 to 2021-03-31
-
Collection
California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic Fisheries Data (2017- )
- Non-calibrated multi-frequency acoustic fisheries data (.raw files) collected aboard RV Sally Ride on the November 2017 CalCOFI (California Cooperative Fisheries Investigations) cruise
- Date: 2017-11-09 to 2017-11-24
-
Collection
A dataset of chromosomal instability gene signature scores in normal and cancer cells from the human breast
- These data show the relative amount of chromosomal instability (CIN) in a diverse array of human breast cell types, including non-transformed mammary epithelial cells as well as cancer cell lines. Additional data is also provided from human embryonic and mesenchymal stem cells.
- Date: 2018 to 2023
-
Collection
Data from: Cusp and mega cusp observations on a mixed sediment beach
- The dataset contains elevation rasters and gravel/cobble locations (North American Datum of 1983 (NAD 83), North American Vertical Datum of 1988 (NAVD 88)).
- Date: 2018 to 2019
-
Collection
Data from: Four Atmospheric Circulation Regimes Over the North Pacific and Their Relationship to California Precipitation on Daily to Seasonal Timescales
- This dataset contains four indices of daily atmospheric variability associated with four circulation regimes over the North Pacific, which have been identified as essential drivers of atmospheric river landfall variability and California precipitation.
- Date: 2018
-
Collection
Data from: Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo
- Microscopy data relative to measurements of cell sizes in early embryos of 3 echinoderm species (Patiria miniata, Lytechinus pictus and Patiriella regularis) and to lineage tracing experiments in the sea star Patiria miniata.
- Date: 2018 to 2022
-
Collection
Data from: The Oceanic Barrier Layer in the Eastern Indian Ocean as a Predictor for Rainfall over Indonesia and Australia
- This collection consists of E3SMv0 model and variety of observational data and scripts in support of relevant manuscript focused on the relationship of the barrier layer in a region West of Sumatra and the terrestrial rainfall over Indonesia and Australia.
- Date: 2018 to 2020
-
Collection
Data from: Towards Implementing AI Post-processing in Weather and Climate: Proposed Actions from the Oxford 2019 Workshop
- We present an open-access experimental testbed database of clean weather and climate data on which traditional methods have been implemented, in order to set benchmarking points for the rapid development of new machine learning methods.
- Date: 2018 to 2020
-
Collection
Integrated Vapor Transport Forecast Models, Reanalysis, and Postprocessing Machine Learning Models for the North American West Coast [2008-2017]
- Integrated Vapor Transport (IVT) for the GFS forecast model and the MERRA2 reanalysis for the North American West Coast and Eastern Pacific. Additionally, this dataset contains the convolutional neural networks used to post-process this forecast.
- Date: 2018-01-11 to 2018-04-13
-
Collection
STXM-NEXAFS Measurements of Atmospheric Aerosol Particles from the Southern Ocean Clouds, Radiation, Aerosol Transport Experimental Study (SOCRATES) in January-February 2018
- Airborne and shipboard measurements of organic composition during the Southern Ocean Clouds, Radiation, Aerosol Transport Experimental Study (SOCRATES) in January-February 2018 provide organic functional groups by scanning transmission X-ray microscope (STXM) with near edge X-ray absorption fine structure (NEXAFS) for particles 0.25 – 1.75 µm diameter.
- Date: 2018-01-15 to 2018-02-26