Browse by Collection: UCSD Research Data Collections

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1. Collection

   Data from: Seasonal cycle and annual reversal of the Somali Current in an eddy-resolving global ocean model

   • The dataset includes a subset of model output from a global 0.1-deg CORE-II forced POP simulation near the region of the Arabian Sea, supporting the Journal of Geophysical Research: Oceans article with the same name.
   • Date: 2005 to 2009
2. 
   Collection

   Data from: 'Whale Wave': shifting strategies structure the complex use of critical fjord habitat by humpbacks

   • This collection contains the data, R programming files, and detailed protocols for various aspects of analysis for the publication: Keen et al. 2016. "Whale Wave": shifting strategies structure the complex use of critical fjord habitat by humpbacks.
   • Date: 2005 to 2015
3. 
   Collection

   Santa Fe Light Cone Simulation research project files

   • This project was the result of an ongoing effort by the Laboratory for Computational Astrophysics, leading to development of the Enzo simulation software capable of a seven-level adaptive mesh refinement (AMR) cosmology simulation.
   • Date: 2005 to 2012
4. 
   Collection

   Teaching Bee

   • This collection of documents provides teaching exercises and information for instructors of students ranging from junior high school through college.
   • Date: 2005 to 2013
5. 
   Collection

   CLIvar and MOde water Dynamics Experiment (CLIMODE) and Antarctic Intermediate Water (AAIW) Float Data Archive

   • Calibrated and uncalibrated data from 12 Argo-equivalent, Webb Research ApexSBE profiling floats in the North Atlantic's Eighteen Degree Water region (CLIMODE), and southeast Pacific’s Subantarctic Mode Water region. Sensors: pressure, temperature, salinity, and Aanderaa optode oxygen.
   • Date: 2005-11-10 to 2008-05-21
6. 
   Collection

   Abraham A. Palmer Lab Research Data Collection

   • We are studying the relationship between genotype and phenotype, especially behavioral phenotypes. Palmer Lab members collaborate on federally-funded projects that use a variety of species including humans, rats, mice, and zebrafish. A major focus of this work has been on developing and refining methods for genome-wide association studies (GWAS) in model organisms and integrating these results with expression QTLs (eQTL) and other -omics to identify specific and testable hypotheses about the relationship between genes and behavior.
   • Date: 2006 to present
7. 
   Collection

   Hydrographic Doppler Sonar System (HDSS): Acoustic ocean current profiling data from the R/V Revelle

   • The Hydrographic Doppler Sonar System on the R/V Revelle provides profiles of absolute ocean current and acoustic scattering strength in support of scientific operations with 50kHz & 140kHz sonars capable of sampling between 20m and 700–1100m and between 20m and 150–350m, respectively.
   • Date: 2006 to 2017
8. 
   Collection

   Western Pacific Atmospheric River Object Data from MODE detection software using West-WRF, GEFS, and MERRA-2

   • The collection contains NetCDF files of atmospheric river objects as processed through the Method for Object-based Diagnostic Evaluation software.
   • Date: 2006-12 to 2017-03
9. 
   Collection

   Data from: Using a Lagrangian particle tracking model to evaluate impacts of El Niño-related advection on euphausiids in the southern California Current System

   • These supplemental animations depict particle backtracks for six euphausiid species sampled in the southern California Current System in spring, 2008-2017. The particle model runs four months backward to determine winter water mass origins.
   • Date: 2007-11-01 to 2017-03-31
10. 
    Collection

    Atmospheric Aerosol Submicron Particle Composition including Organic Functional Group Concentrations at Arctic Locations

    • This collection includes separate data sets of atmospheric aerosol submicron particle composition that include organic functional group concentrations at locations within the Arctic.
    • Date: 2008 to 2014
11. 
    Collection

    Keith Rayner Eye Movements in Reading Data Collection

    • This collection consists of data and materials from a subset of published eye movement studies of reading conducted in Keith Rayner’s Eyetracking Lab at UCSD from 2008-2015
    • Date: 2008 to 2015
12. 
    Collection

    SeaFET & SeapHOx

    • Documentation for SeaFET and SeapHOx oceanographic sensors.
    • Date: 2008 to 2021
13. 
    Collection

    California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic and Trawl Data

    • This is a voluminous data set containing acoustic and trawl data collected on CalCOFI (California Cooperative Oceanic Fisheries Investigations) cruises.
    • Date: 2009 to 2015
14. 
    Collection

    CAVEcam Virtual Reality Photography Collection

    • Full-surround 3-D images make up this collection of original and rendered composite images called CAVEcams which are very high-resolution images for both left and right eye, normally viewed in virtual reality systems, either CAVEs or HMDs.
    • Date: 2009 to 2016
15. 
    Collection

    Center for Aerosol Impacts on Chemistry of the Environment (CAICE)

    • A wide array of chemical, physical, and computational measurements, models, and data sets for laboratory-generated sea spray aerosols and model systems. Each item in the collection is associated with a published peer-reviewed manuscript.
    • Date: 2010 to present
16. 
    Collection

    Data from: DNA damage induced during mitosis undergoes DNA repair synthesis

    • A study of the DNA repair response to laser-induced DNA damage in selected mitotic chromosomes.
    • Date: 2010 to 2019
17. 
    Collection

    Data from: Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package

    • Data, functions, and scripts associated with "Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package" (Kachelein et al. 2022).
    • Date: 2010 to 2021
18. 
    Collection

    Standard Operating Procedure Documents for Coral Reef Ecological Monitoring

    • This collection contains documents describing methods used by the Sandin Lab to collect standardized coral reef community ecology data.
    • Date: 2010 to Present
19. 
    Collection

    Measurements of Generated and Ambient Marine Aerosol Particles in May and June 2010 on board the R/V Atlantis during the California Nexus (CalNex) Experiment

    • Measurements of generated marine aerosol particle physical and chemical properties.
    • Date: 2010-05-14 to 2010-06-08
20. 
    Collection

    Carbonaceous Aerosol Particle Measurements from Cal-Mex 2010 in Tijuana, Mexico

    • Single Particle Soot Photometer (SP2) measurements of aerosol refractory black carbon (BC) content for individual particles and Fourier Transform Infrared (FTIR) spectroscopic analysis of organic functional groups of submicron particles at Parque Morelos during Cal-Mex 2010 from 15 May to 30 June.
    • Date: 2010-05-15 to 2010-06-30