Browse by Collection: UCSD Research Data Collections

Search Results

1. 
   Collection

   Research based PAM50 Signature from the Women's Healthy Eating and Living (WHEL) Study

   • PAM50 subtype calls, ROR risk groups and scores are provided.
   • Date: 2015-07-29 to 2015-11-06
2. 
   Collection

   Data from: Effect of atmospheric forcing resolution on simulated mixed layer depth in the North Pacific

   • This dataset contains daily output from two eddying ocean simulations in the North Pacific. The two experiments have the same configuration except for the atmospheric forcing resolution.
   • Date: 2014 to 2018
3. 
   Collection

   Genotype data from: NIDA Center for GWAS in Outbred rats

   • This collection contains genotype data collected as part of the NIDA Center for GWAS in Outbred rats and more than 10 additional research projects that use N/NIH heterogeneous stock (HS) outbred rats.
   • Date: 2014 to present
4. 
   Collection

   Abraham A. Palmer Lab Research Data Collection

   • We are studying the relationship between genotype and phenotype, especially behavioral phenotypes. Palmer Lab members collaborate on federally-funded projects that use a variety of species including humans, rats, mice, and zebrafish. A major focus of this work has been on developing and refining methods for genome-wide association studies (GWAS) in model organisms and integrating these results with expression QTLs (eQTL) and other -omics to identify specific and testable hypotheses about the relationship between genes and behavior.
   • Date: 2006 to present
5. 
   Collection

   The Center for GWAS in Outbred Rats Database (C-GORD)

   • C-GORD (The Center for GWAS in Outbred Rats Database) provides access to the data generated by the NIDA center for genetic studies of drug abuse and other behaviors as well as physiological phenotypes in N/NIH heterogeneous stock (HS) rats; the data is collected by more than 15 research projects.
   • Date: 2014 to present
6. 
   Collection

   Data from: Mechanisms of heat flux across the Southern Greenland continental shelf in 1/10° and 1/12° ocean/sea ice simulations

   • Volume and heat fluxes across the Greenland continental shelf in two eddy-active coupled ocean/sea-ice simulations.
   • Date: 2005 to 2009
7. 
   Collection

   Data and Code from: Measuring Turbulent Dissipation with Acoustic Doppler Velocimeters in the Presence of Large, Intermittent, Infragravity Frequency Bores

   • Velocity data from Los Peñasquitos Lagoon and processing code to help researchers reproduce ADV de-spiking and turbulent spectrum calculation methods that work in the presence of non-linear, intermittent dynamics as well as a generally applicable, robust inertial sub-range fitting method.
   • Date: 2020-02-02 to 2020-02-14
8. 
   Collection

   Data from: Near-Inertial Surface Currents Around Islands

   • This collection contains numerical model output from a linear 1.5-layer reduced gravity model. These simulations are presented in Siegelman et al. (2022), which examines the behavior of near-inertial surface currents around circular islands.
   • Date: 2019 to 2021
9. 
   Collection

   Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) and Global Ocean Biogeochemistry (GO-BGC) Biogeochemical-Argo Float Data Archive

   • Data from biogeochemical Argo profiling floats within the SOCCOM and GO-BGC programs. Additional floats outside of these programs may also be included, provided their data-streams are managed by the Monterey Bay Aquarium Research Institute (MBARI).
   • Date: 2014-03-27 to present
10. 
    Collection

    Data from: Airborne observations of surface winds, waves and currents from meso to submesoscales

    • Coincident and collocated high-resolution observations of surface currents and directional properties of surface waves collected from an airborne instrument, the Modular Aerial Sensing System (MASS), collected off the coast of Southern California.
    • Date: 2021-05-18 through 2021-11-05
11. 
    Collection

    Data from: Toward probabilistic post-fire debris-flow hazard decision support

    • For a Southern CA domain, from a 24-hour lead time forecast using the WRF model, on a 1-km grid for 100 ensemble members: 5-minute precipitation output for 12 UTC 8 Jan. 2018 to 12 UTC 10 Jan. 2018 and 12 UTC 1 Feb. 2019 to 12 UTC 3 Feb. 2019.
    • Date: 2022-01-01 to 2022-02-28
12. 
    Collection

    Data from: Selectivity and ranking of tight-binding JAK-STAT inhibitors using Markovian milestoning with Voronoi tessellations

    • The data contains the Simulation Enabled Estimation of Kinetic Rates (SEEKR) simulations for the JAK2 and JAK3-ligand complexes with instructions to compute the residence times of the ligands in these complexes.
    • Date: 2020 to 2022
13. 
    Collection

    Data from: Wave-tide interaction for a strongly modulated wave field

    • This collection contains the data sets and code required to generate each figure presented in the publication Ho, A., Merrifield, S. M., and Pizzo, N. (2022). Wave-tide interaction for a strongly modulated wave field. Journal of Physical Oceanography.
    • Date: 2020-08-01 to 2021-08-01
14. 
    Collection

    Data from: Autumn precipitation: the competition with Santa Ana winds in determining fire outcomes in southern California

    • This dataset includes two versions of the Santa Ana Wind Regional Index (SAWRI) and Livneh precipitation data from 1948-2018.
    • Date: Compiled: 1948 to 2018
15. 
    Collection

    Data and Code from: Buoyancy Forcing Dominates the Cross-Equatorial Ocean Heat Transport Response to Northern Hemisphere Extratropical Cooling

    • Fortran source code to developed to override wind stress in the Community Earth System Model (CESM) v. 1.2 and resulting GCM output data from Luongo et al. (2022).
    • Date: 2021-05 to 2021-10
16. 
    Collection

    Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

    • CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
    • Date: 2015-09-18 to 2015-09-20
17. 
    Collection

    Atmospheric and oceanographic measurements from a Wave Glider autonomous surface vehicle collected off the coast of Southern California from May 2020 to December 2021

    • This collection contains meteorology, wave, and current data from Wave Glider Autonomous Surface Vehicles (ASVs) gathered in a series of field deployments conducted off the coast of Southern California from May 2020 to December 2021. Our approach involved operations in close proximity to fixed National Data Buoy Center (NDBC), Coastal Data Information Program (CDIP), and Scripps Institution of Oceanography (SIO) moored buoy assets, which provided ground-truth data to characterize the quality of the Wave Glider measurements.
    • Date: 2020-05 to 2021-12
18. 
    Collection

    Data from: Short-term variability of atmospheric helium revealed through a cryo-enrichment method

    • He/N2 observations from Scripps Pier and supplementary O2/N2, Ar/N2 and CO2 data.
    • Date: 2022-04-23 to 2022-05-25
19. 
    Collection

    Data from: Plankton energy flows using a global size-structured and trait-based model

    • This collection includes a global 20 year (1990-2009) climatology of diagnostic and prognostic variables for the Size-based Plankton Ecological TRAits (MARBL-SPECTRA) model.
    • Date: 1990 to 2009
20. 
    Collection

    Data from: Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package

    • Data, functions, and scripts associated with "Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package" (Kachelein et al. 2022).
    • Date: 2010 to 2021