Browse by Collection: UCSD Research Data Collections

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1. 
   Collection

   Data from: Cobble Tracking Observations at Torrey Pines State Beach, CA, USA

   • Wave data and cobble locations at Torrey Pines State Beach, San Diego, California.
   • Date: 2021 to 2023
2. 
   Collection

   Data from: QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations

   • The data set contains the files necessary to recalculate/reproduce the unbinding rates of ligands for the model host-guest systems and Hsp90-inhibitor complexes in the paper "QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations."
   • Date: 2021 to 2023
3. 
   Collection

   Data from: Toward Enhanced Reusability: A Comparative Analysis of Metadata for Machine Learning Objects and Their Characteristics in Generalist and Specialist Repositories

   • This dataset contains data reported in the paper, Labou et al. 2023, which aims to understand how researchers are currently documenting machine learning (ML) research outputs for sharing, and the extent to which repository metadata fields enable reuse of ML objects.
   • Date: 2021 to 2023
4. 
   Collection

   Genotype data from Crl:CFW(SW)-US_P08 stock of outbred mice

   • Genotype data for CFW mice for the GWAS for age-related hearing loss.
   • Date: 2021 to present
5. 
   Collection

   The Catalyst at UC San Diego

   • The Catalyst, founded summer of 2021, is an inclusive, open access paper series under the Undergraduate Research Hub at UCSD which aims to empower the voices of students who have a passion for conducting research.
   • Date: 2021 to present
6. 
   Collection

   Virtual Talking Circle Study Data

   • Virtual talking circle study data.
   • Date: 2021
7. 
   Collection

   Data from: Observations and Numerical Simulations of the Onset and Growth of Langmuir Circulations

   • This collection contains data from observations and numerical simulations of Langmuir circulations, along with the relevant routines to generate figures in Andriatis et al. 2024.
   • Date: 2020-11-04 to 2020-11-25
8. 
   Collection

   Data from: Observations of Surface Gravity Wave Spectra from Moving Platforms

   • This collection consists of ocean and atmospheric observations (e.g., waves and winds) collected off the coast of San Diego and San Francisco California from instrumented Boeing Liquid Robotics SV3 Wave Gliders.
   • Date: 2020-09-01 to 2021-11-04
9. 
   Collection

   Data from: Overcrowded Housing Reduces COVID-19 Mitigation Measures and Lowers Emotional Health Among San Diego Refugees from September to November of 2020

   • Data for the present cross-sectional study were collected between September 2020 and November 2020 as part of PANA’s biannual community survey to address the primary research question: What is the association between housing and COVID-19 vulnerability?
   • Date: 2020-09 to 2020-11
10. 
    Collection

    Data from: SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine

    • This data set contains the files necessary to recreate the results in the paper "SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine".
    • Date: 2020-08 to 2022-03
11. 
    Collection

    Data from: Wave-tide interaction for a strongly modulated wave field

    • This collection contains the data sets and code required to generate each figure presented in the publication Ho, A., Merrifield, S. M., and Pizzo, N. (2022). Wave-tide interaction for a strongly modulated wave field. Journal of Physical Oceanography.
    • Date: 2020-08-01 to 2021-08-01
12. 
    Collection

    Atmospheric and oceanographic measurements from a Wave Glider autonomous surface vehicle collected off the coast of Southern California from May 2020 to December 2021

    • This collection contains meteorology, wave, and current data from Wave Glider Autonomous Surface Vehicles (ASVs) gathered in a series of field deployments conducted off the coast of Southern California from May 2020 to December 2021. Our approach involved operations in close proximity to fixed National Data Buoy Center (NDBC), Coastal Data Information Program (CDIP), and Scripps Institution of Oceanography (SIO) moored buoy assets, which provided ground-truth data to characterize the quality of the Wave Glider measurements.
    • Date: 2020-05 to 2021-12
13. 
    Collection

    Data from: Feasibility of continuous fever monitoring using wearable devices

    • Sixty-five continuous days of data at one-minute resolution covering fifty individuals reporting COVID-19 infections starting on day 45 in the data set.
    • Date: 2020-03 to 2020-06
14. 
    Collection

    Data and Code from: Measuring Turbulent Dissipation with Acoustic Doppler Velocimeters in the Presence of Large, Intermittent, Infragravity Frequency Bores

    • Velocity data from Los Peñasquitos Lagoon and processing code to help researchers reproduce ADV de-spiking and turbulent spectrum calculation methods that work in the presence of non-linear, intermittent dynamics as well as a generally applicable, robust inertial sub-range fitting method.
    • Date: 2020-02-02 to 2020-02-14
15. 
    Collection

    Data from: The influence of C(sp3)H-Selenium Interactions on the 77Se NMR Quantification of the π-Accepting Properties of Carbenes

    • The frequency and population analysis results for several 5- and 6-membered carbenes. Structures are unsimplified from those used experimentally.
    • Date: 2020-02 to 2020-07
16. 
    Collection

    Data from: Impact of Atmospheric River Reconnaissance Dropsonde Data on the Assimilation of Satellite Data in GFS

    • This collection are the satellite radiance data from the data denial experiments for the 2020 atmospheric river reconnaissance. The data are generated by the NCEP GDAS system during January 24 – March 18, 2020, corresponding to analyses in Zheng et al. 2022.
    • Date: 2020-01-24 to 2020-03-18
17. 
    Collection

    Digital Media Lab

    • This collection includes a range of 3D media projects created by the UC San Diego Library Digital Media Lab.
    • Date: 2020-01-02
18. 
    Collection

    Data from: Cyclic(Alkyl)(Amino)Carbene Ligands Enable Cu-Catalyzed Markovnikov Protoboration and Protosilylation of Terminal Alkynes: A Versatile Portal to Functionalized Alkenes

    • Included are the Gaussian output files (.chk, .fchk, and .log) from DFT calculations on the free carbenes explored in the protoboration and protosilylation of alkynes.
    • Date: 2020 to 2021
19. 
    Collection

    Data from: Multi-Source Feature Fusion for Object Detection Association in Connected Vehicle Environments

    • This dataset contains labeled virtual and real-world examples of object detection association in a connected vehicle environment.
    • Date: 2020 to 2022
20. 
    Collection

    Data from: Multiscale Modeling Shows How 2'-deoxy-ATP Rescues Ventricular Function in Heart Failure

    • Molecular dynamics simulations of myosin (1QVI) carried out with either ATP or dATP bound from the manuscript "Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure"
    • Date: 2020 to 2022