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Collection

Data from: QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations

The data set contains the files necessary to recalculate/reproduce the unbinding rates of ligands for the model host-guest systems and Hsp90-inhibitor complexes in the paper "QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations."
Date: 2021 to 2023

Collection

Data from: Commitment Problems or Bidding Wars? Rebel Fragmentation as Peace Building

This project uses an original dataset of field commanders in post-civil war Tajikistan to show that warlords from the victorious faction were as likely to be purged from the ruling coalition in a given year as warlords from the defeated faction.
Date: 2012

Collection

A dataset of chromosomal instability gene signature scores in normal and cancer cells from the human breast

These data show the relative amount of chromosomal instability (CIN) in a diverse array of human breast cell types, including non-transformed mammary epithelial cells as well as cancer cell lines. Additional data is also provided from human embryonic and mesenchymal stem cells.
Date: 2018 to 2023

Collection

Data from: A climate vulnerability assessment of cultural heritage in the La Fortaleza and San Juan National Historic Site World Heritage Site

Inundation threats related to climate change in San Juan Bay, Puerto Rico, which includes the World Heritage Site of La Fortaleza and San Juan National Historic Site. The map contains separate layers for sea level rise from NOAA's Sea Level Rise Viewer Tool, and layers for other relevant variables produced by the Coastal Resilience Evaluation and Siting Tool (CREST), acquired in Spring 2023.
Date: 2023-04-03 to 2023-06-09

Collection

Aerosol Microphysics and Chemical Measurements at Mt. Soledad and Scripps Pier during the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) from February 2023 to February 2024

Aerosol Microphysics and Chemical Measurements at Mt. Soledad and Scripps Pier during the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) from February 2023 to February 2024.
Date: 2023-02-15 to 2024-02-14

Collection

Data from: Overcrowded Housing Reduces COVID-19 Mitigation Measures and Lowers Emotional Health Among San Diego Refugees from September to November of 2020

Data for the present cross-sectional study were collected between September 2020 and November 2020 as part of PANA’s biannual community survey to address the primary research question: What is the association between housing and COVID-19 vulnerability?
Date: 2020-09 to 2020-11

Collection

Data from: Observations of Surface Gravity Wave Spectra from Moving Platforms

This collection consists of ocean and atmospheric observations (e.g., waves and winds) collected off the coast of San Diego and San Francisco California from instrumented Boeing Liquid Robotics SV3 Wave Gliders.
Date: 2020-09-01 to 2021-11-04

Collection

Data from: Cobble Tracking Observations at Torrey Pines State Beach, CA, USA

Wave data and cobble locations at Torrey Pines State Beach, San Diego, California.
Date: 2021 to 2023

Collection

Data from: Machine learning for daily forecasts of Arctic sea-ice motion: an attribution assessment of model predictive skill

MATLAB R2021b, Python and bash files used for data download and analysis. Processed data and MATLAB R2021b plotting files.
Date: 1989 to 2021

Collection

Data from: Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model

This data collection represents all UH8to2 model data used for the publication "Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model". This includes ocean and sea ice characteristics from the 2017-2020 UH8to2 model run.
Date: Model representation: 2017 to 2020

Collection

Data from: A Climatic Sand Management Model for Cardiff State Beach, CA

Annual mean beach width and nearshore sand volume survey estimates for 2000-2019 at South Torrey Pines and Cardiff State Beach, CA, and associated sediment budget modeling code for Cardiff State Beach.
Date: 2000 to 2021

Collection

Data from: Multi-Source Feature Fusion for Object Detection Association in Connected Vehicle Environments

This dataset contains labeled virtual and real-world examples of object detection association in a connected vehicle environment.
Date: 2020 to 2022

Collection

Observations of Solar Analog Field Stars from the Hamilton Echelle Spectrograph at Lick Observatory

This observing program used the Hamilton Echelle Spectrograph on the three meter Shane telescope at Lick Observatory to obtain high resolution spectroscopic observations of 211 solar analog field stars.
Date: 2013 to 2014

Collection

Data from: Identification of weakly- to strongly-turbulent three-wave processes in a micro-scale system

Height of water surface at center of 40uL sessile drop at 115,200fps for ~1s during actuation by ~7MHz thickness mode ultrasound. Each data set was taken at the indicated ultrasound input power level (from 0-350 mW).
Date: 2021-11-28 to 2022-01-18

Collection

Data from: Calibrated absolute seafloor pressure measurements for geodesy in Cascadia

Raw and corrected pressure data from campaign-style surveys of absolute calibrated sea pressure using an Absolute Self-Calibrating Pressure Recorder (ASCPR) in the Cascadia subduction zone from 2014 to 2017.
Date: 2014 to 2017

Collection

Data and Code from: 3D Reconstruction and Segmentation of Barely Visible Impact Damage in Composites from Pulse-Echo Ultrasonic C-Scans

26 processed pulse-echo ultrasonic C-scans of composites with barely visible impact damage with varying layups and impact energies, with calculated time-of-flight, contours of damaged regions, damage depth map, and 3D reconstruction of the damage state.
Date: 2022 to 2023

Collection

Virtual Talking Circle Study Data

Virtual talking circle study data.
Date: 2021

Collection

Data from: North American Monsoon Impacts Southern California’s Coastal Low Clouds

This collection contains data from "North American Monsoon Impacts Southern California’s Coastal Low Clouds" (Clemesha et al. 2023). Data files include: satellite-derived Coastal Low Cloudiness (CLC) for May - September 1996 - 2020, seasonal cycle fit of CLC used to create daily anomalies, San Diego airport cloud cover, precipitable water content from 850 to 300 hPa from observations in southern and northern California, a previously published single column model radiative scheme with input and outputs files used in this study.
Date: May through September, 1996 to 2020

Collection

Research based PAM50 Signature from the Women's Healthy Eating and Living (WHEL) Study

PAM50 subtype calls, ROR risk groups and scores are provided.
Date: 2015-07-29 to 2015-11-06

Collection

Data from: Effect of atmospheric forcing resolution on simulated mixed layer depth in the North Pacific

This dataset contains daily output from two eddying ocean simulations in the North Pacific. The two experiments have the same configuration except for the atmospheric forcing resolution.
Date: 2014 to 2018

Collection

Genotype data from: NIDA Center for GWAS in Outbred rats

This collection contains genotype data collected as part of the NIDA Center for GWAS in Outbred rats and more than 10 additional research projects that use N/NIH heterogeneous stock (HS) outbred rats.
Date: 2014 to present

Collection

Abraham A. Palmer Lab Research Data Collection

We are studying the relationship between genotype and phenotype, especially behavioral phenotypes. Palmer Lab members collaborate on federally-funded projects that use a variety of species including humans, rats, mice, and zebrafish. A major focus of this work has been on developing and refining methods for genome-wide association studies (GWAS) in model organisms and integrating these results with expression QTLs (eQTL) and other -omics to identify specific and testable hypotheses about the relationship between genes and behavior.
Date: 2006 to present

Collection

The Center for GWAS in Outbred Rats Database (C-GORD)

C-GORD (The Center for GWAS in Outbred Rats Database) provides access to the data generated by the NIDA center for genetic studies of drug abuse and other behaviors as well as physiological phenotypes in N/NIH heterogeneous stock (HS) rats; the data is collected by more than 15 research projects.
Date: 2014 to present

Collection

Data from: Mechanisms of heat flux across the Southern Greenland continental shelf in 1/10° and 1/12° ocean/sea ice simulations

Volume and heat fluxes across the Greenland continental shelf in two eddy-active coupled ocean/sea-ice simulations.
Date: 2005 to 2009

Collection

Data and Code from: Measuring Turbulent Dissipation with Acoustic Doppler Velocimeters in the Presence of Large, Intermittent, Infragravity Frequency Bores

Velocity data from Los Peñasquitos Lagoon and processing code to help researchers reproduce ADV de-spiking and turbulent spectrum calculation methods that work in the presence of non-linear, intermittent dynamics as well as a generally applicable, robust inertial sub-range fitting method.
Date: 2020-02-02 to 2020-02-14

Collection

Data from: Near-Inertial Surface Currents Around Islands

This collection contains numerical model output from a linear 1.5-layer reduced gravity model. These simulations are presented in Siegelman et al. (2022), which examines the behavior of near-inertial surface currents around circular islands.
Date: 2019 to 2021

Collection

Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) and Global Ocean Biogeochemistry (GO-BGC) Biogeochemical-Argo Float Data Archive

Data from biogeochemical Argo profiling floats within the SOCCOM and GO-BGC programs. Additional floats outside of these programs may also be included, provided their data-streams are managed by the Monterey Bay Aquarium Research Institute (MBARI).
Date: 2014-03-27 to present

Collection

Data from: Airborne observations of surface winds, waves and currents from meso to submesoscales

Coincident and collocated high-resolution observations of surface currents and directional properties of surface waves collected from an airborne instrument, the Modular Aerial Sensing System (MASS), collected off the coast of Southern California.
Date: 2021-05-18 through 2021-11-05

Collection

Data from: Toward probabilistic post-fire debris-flow hazard decision support

For a Southern CA domain, from a 24-hour lead time forecast using the WRF model, on a 1-km grid for 100 ensemble members: 5-minute precipitation output for 12 UTC 8 Jan. 2018 to 12 UTC 10 Jan. 2018 and 12 UTC 1 Feb. 2019 to 12 UTC 3 Feb. 2019.
Date: 2022-01-01 to 2022-02-28

Collection

Data from: Selectivity and ranking of tight-binding JAK-STAT inhibitors using Markovian milestoning with Voronoi tessellations

The data contains the Simulation Enabled Estimation of Kinetic Rates (SEEKR) simulations for the JAK2 and JAK3-ligand complexes with instructions to compute the residence times of the ligands in these complexes.
Date: 2020 to 2022

Collection

Data from: Wave-tide interaction for a strongly modulated wave field

This collection contains the data sets and code required to generate each figure presented in the publication Ho, A., Merrifield, S. M., and Pizzo, N. (2022). Wave-tide interaction for a strongly modulated wave field. Journal of Physical Oceanography.
Date: 2020-08-01 to 2021-08-01

Collection

Data from: Autumn precipitation: the competition with Santa Ana winds in determining fire outcomes in southern California

This dataset includes two versions of the Santa Ana Wind Regional Index (SAWRI) and Livneh precipitation data from 1948-2018.
Date: Compiled: 1948 to 2018

Collection

Data and Code from: Buoyancy Forcing Dominates the Cross-Equatorial Ocean Heat Transport Response to Northern Hemisphere Extratropical Cooling

Fortran source code to developed to override wind stress in the Community Earth System Model (CESM) v. 1.2 and resulting GCM output data from Luongo et al. (2022).
Date: 2021-05 to 2021-10

Collection

Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
Date: 2015-09-18 to 2015-09-20

Collection

Atmospheric and oceanographic measurements from a Wave Glider autonomous surface vehicle collected off the coast of Southern California from May 2020 to December 2021

This collection contains meteorology, wave, and current data from Wave Glider Autonomous Surface Vehicles (ASVs) gathered in a series of field deployments conducted off the coast of Southern California from May 2020 to December 2021. Our approach involved operations in close proximity to fixed National Data Buoy Center (NDBC), Coastal Data Information Program (CDIP), and Scripps Institution of Oceanography (SIO) moored buoy assets, which provided ground-truth data to characterize the quality of the Wave Glider measurements.
Date: 2020-05 to 2021-12

Collection

Data from: Short-term variability of atmospheric helium revealed through a cryo-enrichment method

He/N2 observations from Scripps Pier and supplementary O2/N2, Ar/N2 and CO2 data.
Date: 2022-04-23 to 2022-05-25

Collection

Data from: Plankton energy flows using a global size-structured and trait-based model

This collection includes a global 20 year (1990-2009) climatology of diagnostic and prognostic variables for the Size-based Plankton Ecological TRAits (MARBL-SPECTRA) model.
Date: 1990 to 2009

Collection

Data from: Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package

Data, functions, and scripts associated with "Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package" (Kachelein et al. 2022).
Date: 2010 to 2021

Collection

Art of Science

UC San Diego Library Art of Science contest submissions.
Date: 2021-02 to present

Collection

Data from: Airborne observations of shoaling and breaking internal waves

This collection contains data presented in: "Airborne observations of shoaling and breaking internal waves." This includes a mosaic of sea surface temperature, spectral analysis of temperature structures, surface velocities, and areas undergoing breaking.
Date: 2015-08-01

Collection

Shore Stations Program Data Archive: Current and historical coastal ocean temperature and salinity measurements from California stations

Data from the Shore Stations Program consists of current and historical daily, manual measurements of surface temperature and salinity from the nine active stations located on the California coastline.
Date: 1916 to present

Collection

Meteorological and Aerosol Measurements near the Salton Sea, California

This collection contains meteorological and aerosol measurements collected at a field site located near the western shoreline of the Salton Sea, California. These data are designed to study the dynamics and physical properties of dust storms and other aerosol events in the region.
Date: 2019-12 to present

Collection

Underway Shipboard Acoustic Doppler Current Profiler (SADCP) Data Archive

Underway shipboard acoustic Doppler current profiler (SADCP) database assembled from the public archive of CODAS post-processed data.
Date: 1990 to 2020

Collection

Data from: Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo

Microscopy data relative to measurements of cell sizes in early embryos of 3 echinoderm species (Patiria miniata, Lytechinus pictus and Patiriella regularis) and to lineage tracing experiments in the sea star Patiria miniata.
Date: 2018 to 2022

Collection

Historical Catalog of Winter Weather Regimes Impacting California, 1949-2017

This dataset contains a historical catalog of daily atmospheric winter weather regimes observed over the North Pacific and western North America spanning 1949-2017. These weather regimes have been identified as important drivers of atmospheric river landfalls, Santa Ana winds, floods, and wildfires in California.
Date: November-February 1949 to 2017

Collection

Data from: SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine

This data set contains the files necessary to recreate the results in the paper "SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine".
Date: 2020-08 to 2022-03

Collection

Center for Western Weather and Water Extremes (CW3E) Surface Meteorological Observational Dataset

CW3E Surface Meteorological Observational Dataset: temperature, relative humidity, pressure, precipitation, and soil moisture and temperature at six levels collected every 2 minutes, from 11 stations in the Russian, Yuba, Feather, and Prado watersheds.
Date: 2017 to present

Collection

XRF and FTIR data from Pismo Beach Air Quality Study from May 2019 - May 2021

XRF and FTIR atmospheric aerosol measurements from five campaigns conducted in the Oceano Dunes from May 2019 to May 2021. This includes dust, sea salt, non-sea salt sulfate, organic mass, and an unidentified fraction.
Date: 2019-05-14 to 2021-05-24

Collection

Scripps Argo Trajectory-Based Velocity Product

This collection contains absolute velocity estimates from quality controlled Argo trajectory files. Both Scripps trajectory products include trajectories from Core, BGC and Deep Argo floats starting in 2001. The Scripps trajectory products provide velocities between 800-1200 dbar or 100-6200 dbar.
Date: 2001 through 2020

Collection

Data from: Using a Lagrangian particle tracking model to evaluate impacts of El Niño-related advection on euphausiids in the southern California Current System

These supplemental animations depict particle backtracks for six euphausiid species sampled in the southern California Current System in spring, 2008-2017. The particle model runs four months backward to determine winter water mass origins.
Date: 2007-11-01 to 2017-03-31

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