Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Collection

    Data from: Trade-offs in motivating volunteer effort: Experimental evidence on voluntary contributions to science

    • Data used in the analysis reported in "Trade-offs in motivating volunteer effort: Experimental evidence on voluntary contributions to science" (Lyons & Zhang, 2019).
    • Date: 2017-06 to 2017-08
  2. Collection

    Data from: Validation of geodetic seafloor benchmark stability using structure-from-motion and seafloor pressure data

    • Data used to validate structure-from-motion underwater as a potential geodetic site imaging tool by confirming 3D modeled measurements with well-constrained heights determined from pressure measurements.
    • Date: 2017-09-06
  3. Collection

    Data from: Wave-Current Interactions at Meso and Submesoscales: Insights from Idealized Numerical Simulations

    • This collection contains output from idealized simulations of wave-current interactions produced using the wave model WAVEWATCH III and analyzed by Villas Bôas et al. (2020) [doi:10.1175/JPO-D-20-0151.1]. The data can be used in conjunction with the open-source code [https://github.com/biavillasboas/IdealizedWaveCurrent] to reproduce all figures in the paper.
    • Date: 2019 to 2020
  4. Collection

    Data Science & Engineering Master of Advanced Study (DSE MAS) Capstone Projects

    • This collection contains the capstone projects for the Data Science & Engineering (DSE) Master of Advanced Study (MAS) program at UC San Diego.
    • Date: 2019 to present
  5. Collection

    Refugee Data and Gender

    • Review of datasets on refugees.
    • Date: 2019 to 2021
  6. Collection

    San Diego Supercomputer Center (SDSC) Research Data Services Materials Collection

    • Research Data Services (RDS) division at SDSC provides infrastructure and technical expertise to support data-intensive research for academic and non-academic customers. This collection includes informational and technical work materials developed for the teams’ many projects.
    • Date: 2019 to present
  7. Collection

    Scripps Ecological Observatory

    • Flow cytometry and dissolved gas data (oxygen and argon) collected at the Ellen Browning Scripps Pier.
    • Date: 2019 to present
  8. Collection

    Scripps-KAUST Regional Integrated Prediction System (SKRIPS)

    • A regional coupled ocean–atmosphere model (based on MITgm, WRF, and ESMF) to study air--sea feedbacks.
    • Date: 2019
  9. Collection

    Solomon Sea SPICE Mooring Data

    • Moorings were deployed in the Solomon Sea outflow channels to measure water velocity, temperature, and salinity as a part of an international experiment to observe and monitor the ocean circulation of the southwest Pacific Ocean.
    • Date: 2012-07-15 to 2015-08-16
  10. Collection

    Southern California Narrow Cold-Frontal Rainband (NCFR) Catalogue (1995-2020)

    • The following dataset includes the complete list of NCFR events for Southern California from 1995-2020. Supplemental figures including synoptic meteorology plots using ERA5 reanalysis data, level-II NEXRAD composite plots created using LROSE, and water year and monthly NCFR figures are also provided. A README file desribing each component is included.
    • Date: 2019 to 2020
  11. Collection

    The Atmospheric River-CONNected objECT (AR-CONNECT) algorithm applied to the National Aeronautics and Space Administration (NASA) Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA V2) - 1983 to 2016

    • The Atmospheric River-CONNected objECT (CONNECT) algorithm is applied to global Integrated Water Vapor Transport (IVT) data from the NASA MERRA-2 reanalysis product for the period 1983 to 2016.
    • Date: 2019 to 2020
  12. Collection

    Data from: Metabolic rates in the Agua Hedionda Lagoon during the 2020 Southern California red tide event

    • A time series from autonomous SeapHOx sensors (pH, dissolved oxygen (DO), salinity, temperature, and pressure) in the Agua Hedionda Lagoon, captured baseline conditions in 2018 and the effects of a massive red tide occurring along the Southern & Baja California coast during the spring of 2020.
    • Date: 2018-11-02 to 2018-12-24 and 2020-02-05 to 2020-06-14
  13. Collection

    Data from: Technical Note: Stability of tris pH buffer in artificial seawater stored in bags

    • pH and total dissolved inorganic carbon measurements from tris buffer in artificial seawater stored in gas impermeable bags.
    • Date: 2018-05-24 to 2019-12-20
  14. Collection

    Data from: Ice break-up controls dissipation of wind-waves across Southern Ocean sea ice

    • In situ wave observations and WaveWatch III model output for Ardhuin et al. (2020).
    • Date: 2018-05 to 2018-07
  15. Collection

    Data from: Observations of strongly modulated surface wave and wave breaking statistics at a submesoscale front

    • This collection contains data presented in Vrecica et al 2021, including an overview of a submesoscale front, wave statistics, and wave breaking statistics.
    • Date: 2018-04-17
  16. Collection

    STXM-NEXAFS Measurements of Atmospheric Aerosol Particles from the Southern Ocean Clouds, Radiation, Aerosol Transport Experimental Study (SOCRATES) in January-February 2018

    • Airborne and shipboard measurements of organic composition during the Southern Ocean Clouds, Radiation, Aerosol Transport Experimental Study (SOCRATES) in January-February 2018 provide organic functional groups by scanning transmission X-ray microscope (STXM) with near edge X-ray absorption fine structure (NEXAFS) for particles 0.25 – 1.75 µm diameter.
    • Date: 2018-01-15 to 2018-02-26
  17. Collection

    Integrated Vapor Transport Forecast Models, Reanalysis, and Postprocessing Machine Learning Models for the North American West Coast [2008-2017]

    • Integrated Vapor Transport (IVT) for the GFS forecast model and the MERRA2 reanalysis for the North American West Coast and Eastern Pacific. Additionally, this dataset contains the convolutional neural networks used to post-process this forecast.
    • Date: 2018-01-11 to 2018-04-13
  18. Collection

    A dataset of chromosomal instability gene signature scores in normal and cancer cells from the human breast

    • These data show the relative amount of chromosomal instability (CIN) in a diverse array of human breast cell types, including non-transformed mammary epithelial cells as well as cancer cell lines. Additional data is also provided from human embryonic and mesenchymal stem cells.
    • Date: 2018 to 2023
  19. Collection

    Data from: Cusp and mega cusp observations on a mixed sediment beach

    • The dataset contains elevation rasters and gravel/cobble locations (North American Datum of 1983 (NAD 83), North American Vertical Datum of 1988 (NAVD 88)).
    • Date: 2018 to 2019
  20. Collection

    Data from: Four Atmospheric Circulation Regimes Over the North Pacific and Their Relationship to California Precipitation on Daily to Seasonal Timescales

    • This dataset contains four indices of daily atmospheric variability associated with four circulation regimes over the North Pacific, which have been identified as essential drivers of atmospheric river landfall variability and California precipitation.
    • Date: 2018
  21. Collection

    Data from: Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo

    • Microscopy data relative to measurements of cell sizes in early embryos of 3 echinoderm species (Patiria miniata, Lytechinus pictus and Patiriella regularis) and to lineage tracing experiments in the sea star Patiria miniata.
    • Date: 2018 to 2022
  22. Collection

    Data from: The Oceanic Barrier Layer in the Eastern Indian Ocean as a Predictor for Rainfall over Indonesia and Australia

    • This collection consists of E3SMv0 model and variety of observational data and scripts in support of relevant manuscript focused on the relationship of the barrier layer in a region West of Sumatra and the terrestrial rainfall over Indonesia and Australia.
    • Date: 2018 to 2020
  23. Collection

    Data from: Towards Implementing AI Post-processing in Weather and Climate: Proposed Actions from the Oxford 2019 Workshop

    • We present an open-access experimental testbed database of clean weather and climate data on which traditional methods have been implemented, in order to set benchmarking points for the rapid development of new machine learning methods.
    • Date: 2018 to 2020
  24. Collection

    California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic Fisheries Data (2017- )

    • Non-calibrated multi-frequency acoustic fisheries data (.raw files) collected aboard RV Sally Ride on the November 2017 CalCOFI (California Cooperative Fisheries Investigations) cruise
    • Date: 2017-11-09 to 2017-11-24
  25. Collection

    Data from: Quantitative regional observations of the geological influence on primary sandy beaches

    • The dataset includes mapped beach elevations, and gravel/bedrock locations in GeoTIFF format.
    • Date: 2017-10-01 to 2021-03-31
  26. Collection

    Observations and Model Simulations from the Inner-Shelf Dynamics Experiment (ISDE)

    • In-situ observations and model simulations from the Inner-Shelf Dynamics Experiment (ISDE)
    • Date: August 2017 to December 2017
  27. Collection

    Data from: Exploration and Explanation in Computational Notebooks

    • Analysis of approximately 1.25 million Jupyter Notebooks downloaded from public repositories on GitHub in July 2017.
    • Date: July 2017
  28. Collection

    Flat Panel Impact and Residual Strength Testing and Characterization by Ultrasonic and X-Ray Computed Tomography Non-Destructive Evaluation

    • Flat composite panel impacts and residual strength testing. Impact damage characterized by X-ray computed tomography and ultrasonic scanning and residual strength testing characterized by digital image correlation.
    • Date: 2017-07 to 2017-09
  29. Collection

    Center for Western Weather and Water Extremes (CW3E) Surface Meteorological Observational Dataset

    • CW3E Surface Meteorological Observational Dataset: temperature, relative humidity, pressure, precipitation, and soil moisture and temperature at six levels collected every 2 minutes, from 11 stations in the Russian, Yuba, Feather, and Prado watersheds.
    • Date: 2017 to present
  30. Collection

    Data from: A Glimpse through Time and Space: Visualizing Spatial Continuity and History-making at Çatalhöyük, Turkey

    • This collection includes 3-D models, derived 3-D renders, Unity 3D asset packages, a Win64 3-D app, and related metadata that reconstruct both spatially and temporally (4-D) the ‘Shrine’ 10 sequence at the Neolithic site of Çatalhöyük, Turkey
    • Date: 2017 to 2019
  31. Collection

    Data from: Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model

    • This data collection represents all UH8to2 model data used for the publication "Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model". This includes ocean and sea ice characteristics from the 2017-2020 UH8to2 model run.
    • Date: Model representation: 2017 to 2020
  32. Collection

    Data from: Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking

    • All structures and RMSDs used in Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking are provided here.
    • Date: 2017 to 2018
  33. Collection

    Data from: Increasing STEM Undergraduate Participation in Innovative Activities: Field Experimental Evidence

    • Measures of performance on an innovation contest by whether or not participants receive randomized encouragement, and whether participants self-selected into the contest or joined after receiving a monetary inducement for doing so.
    • Date: 2017-01 to 2017-07
  34. Collection

    Data from: Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase

    • The input and output Brownian dynamics trajectories associated with this study.
    • Date: 2017 to 2020
  35. Collection

    Data from: Soft robotic steerable micro-catheter for the endovascular treatment of cerebral disorders

    • Results of analysis and experiment on steerable microcatheters and microguidewires, including video and raw data.
    • Date: 2017-01-01 to 2021-06-30
  36. Collection

    Data from: Structural basis for ligand modulation of the CCR2 conformational landscape

    • This collection contains the molecular dynamics trajectories and analysis scripts used in the paper “Structural basis for ligand modulation of the CCR2 conformational landscape”.
    • Date: 2017 to 2018
  37. Collection

    Kastrouli Mycenaean Excavations, Greece 2016

    • Files relevant to the 2016 archaeological excavations of the site Kastrouli, Greece including artifact, photography, geospatial, and other data.
    • Date: 2016-07-20 to 2016-08-03
  38. Collection

    MITgcm 3-daily global sea surface temperature, ocean currents, nitrate and phytoplankton biomass (1992 - 2016)

    • 3-daily averaged sea surface temperature, ocean currents (u, v), nitrate and phytoplankton biomass for the 35 types in the top 10m of the model. Model output has been interpolated from the natural grid onto 1/5th degree resolution.
    • Date: May 2016
  39. Collection

    Data from: Who's Asking? Interviewer Coethnicity Effects in African Survey Data

    • This collection contains the code, data, and output files associated with the article indicated herein.
    • Date: 2012
  40. Collection

    Data from: Contrasting Local and Long-Range-Transported Warm Ice-Nucleating Particles During an Atmospheric River in Coastal California, USA

    • Data, modeling results and analyses supporting research into meteorology and ice nucleating particles.
    • Date: 2016-03-05 to 2018-05-01
  41. Collection

    Data from: Improved Forecast Skill through the Assimilation of Dropsonde Observations from the Atmospheric River Reconnaissance Program

    • This dataset are initial and boundary conditions generated by West-WRF implemented at Scripps Institution of Oceanography of UC San Diego for the Atmospheric River Reconnaissance dropsonde data denial experiments described in Zheng et al. 2021 (JGR). With this dataset, one should be able to repeat the WRF simulations for the NoDROP and WithDROP experiments using WRF V3.9.1.1.
    • Date: 2016-02-14 to 2019-03-01
  42. Collection

    Data from: Carbon and Oxygen Isotopic Fractionation in the Products of Low-Temperature VUV Photodissociation of Carbon Monoxide

    • Carbon and oxygen isotopic fractionation during photodissociation by VUV photons. This Matlab based model only calculates the isotope effect in the self-shielding process and not by any other means (e.g., predissociation). Data files are included.
    • Date: 2016 to 2018
  43. Collection

    Data from: Eddy-induced acceleration of Lagrangian floats

    • Simulated Argo float positions computed using velocities from the Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2) project.
    • Date: 2016 to 2019
  44. Collection

    Data from: Implications of Byproduct Chemistry in Nanoparticle Synthesis

    • Absorption spectra of organic byproducts of tetrachloroaurate reduction by 2-(N-morpholino)ethanesulfonate (MES) were calculated via time-dependent density functional theory. These include small organic molecules, organic MES oligomers, and Au(I) complexes.
    • Date: 2016 to 2018
  45. Collection

    Data from: Is the Mediterranean the New Rio Grande? U.S. and E.U. Immigration Pressures in the Long Run

    • This project uses a gravity-style model to project bilateral migration flows for the next 40 years. It shows that Europe—unlike the US—will face substantial, demographically driven migration pressures from across the Mediterranean for decades to come.
    • Date: 2016-01-01 to 2016-05-31
  46. Collection

    Data from: Superconductivity Found in Meteorites

    • This data details the discovery and analysis of superconducting material in two meteorites. These are the first superconducting materials found in extraterrestrial samples and the superconducting phases are characterized as alloys of lead, tin and indium.
    • Date: 2016 to 2019
  47. Collection

    Radiosonde Data Collected During California Storms

    • Vertical profiles of temperature, humidity, pressure, and wind speed collected during Atmospheric River events in California (2017-2021).
    • Date: 2016 to 2021
  48. Collection

    The CONNected objECT, or CONNECT algorithm applied to National Aeronautics and Space Administration (NASA) Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA V2) - Integrated Water Vapor from 1980 to 2016

    • The CONNected objECT (CONNECT) algorithm is applied to global Integrated Water Vapor Transport (IVT) data from the NASA’s Modern-Era Retrospective Analysis for Research and Applications – Version 2 reanalysis product for the period 1980 to 2016.
    • Date: 2016
  49. Collection

    Organic and Elemental Composition of Submicron Aerosol Particles during AWARE at McMurdo Station, Antarctica

    • Fourier Transform Infrared (FTIR) spectroscopic analysis of organic functional groups and X-ray Fluorescence (XRF) of elements in submicron particles at McMurdo Station, Antarctica.
    • Date: 2015-11-29 to 2016-12-19