Library Digital Collections

Browse by Collection: UCSD Research Data Collections

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  1. Collection

    North Atlantic Current Time Series from Satellite and Float Observations

    • This is a time series of the North Atlantic Current as it crosses between the Irminger Sea and the Porcupine Abyssal Plain region, calculated from satellite altimetry and Argo float data.
    • Date: 1993-01-01 to 2025-07-02
  2. Collection

    Data from: Real-time ground motion records of coastal cliff failures in San Diego County, California

    • Data from in situ geophysical sensors (tilt, creep, and displacement), weather and environmental records (temperature, precipitation, and wave height), and tides (height), collected in San Diego County (San Elijo State Beach and Del Mar) in 2023 and 2024.
    • Date: 2023 to 2025
  3. Collection

    Data from: Understanding regional pCO2 model biases and uncertainties in the Biogeochemical Southern Ocean State Estimate (B-SOSE)

    • This collection contains model code and data to run the Biogeochemical Southern Ocean State Estimate (B-SOSE) and obtain CO2 fugacity (fCO2). B-SOSE results under control and perturbed configurations are used to estimate optimized model parameters.
    • Date: 2019-09 to 2020-08
  4. Collection

    Energy density and content of forage species in the California Current Ecosystem

    • Energy density and content of forage species in the California Current Ecosystem were determined from samples collected in Southern and Central California during 2015-2019.
    • Date: 2015 to 2019
  5. Collection

    Data from: Spectral Refraction Modeling of Waves around the Steep Reef at Palau

    • This collection contains observations of bulk wave statistics from 10 sites around the island chain of Palau and wave estimates from a spectral refraction model.
    • Date: 2013 to 2023
  6. Collection

    Data from: A Crystalline Annelated Pyridin-1-ylidene and Its Isomerization into a Pyridin-3-ylidene

    • All output files for modeling the mechanism of HMDS-catalyzed carbene regioisomerization, as well as electronic structure calculations for comparing relevant model pyridinlyidenes.
    • Date: 2025
  7. Collection

    Ellen Browning Scripps Herbarium Collection

    • Digitized pressed seaweed specimens and associated metadata.
    • Date: 1904 to 2025-07
  8. Collection

    Quantification of norovirus GII in the Tijuana River estuary with ddPCR

    • This collection contains quantification of norovirus GII via ddPCR for the Tijuana River estuary.
    • Date: 2024-06-01
  9. Collection

    Experiments for Optical Fiber Geophysical Sensors

    • Data from a Time Division Multiplexing experiment on optics-based geophysical sensors.
    • Date: 2024-10-22 to 2024-10-22
  10. Collection

    Data from: Warming Band in Southern Ocean's Indian Sector: The Role of Remote Atlantic Buoyancy Forcing via Poleward-Shifting Circulation Response

    • Model output from two experiment suites. One uses MITgcm with regional surface perturbations; the other uses CESM1 with wind locking to isolate heat-forced changes. Both provide full global ocean data.
    • Date: 2022 to 2024
  11. Collection

    Data from: Harnessing AI data-driven global weather models for climate attribution: An analysis of the 2017 Oroville Dam extreme atmospheric river

    • This study explores storyline-based climate attribution with AI global weather models, whose short simulation inference times allow one to generate real-time attributions when public attention is heightened. It focuses on the atmospheric river episode of February 2017 that contributed to the Oroville Dam spillway incident in Northern California. Attributions are compared to those from a dynamical model, which represent a plausible "pseudo-reality". This collection contains the data used and generated in the aforementioned study.
    • Date: 2017-02-05 to 2017-02-11
  12. Collection

    Data from: A Regional High Resolution AI Weather Model for the Prediction of Atmospheric Rivers and Extreme Precipitation

    • Precipitation forecasts generated by AI models.
    • Date: 2025-03 to 2025-05
  13. Collection

    Griffith Lab Research Data Collection

    • This collection consists of data associated with Griffith Lab publications, which study structure-property-function relationships in complex energy-related materials.
    • Date: 2023 to present
  14. Collection

    Data from: pH-Dependent Surface Interactions and Structural Changes for DNA Adsorbed on TiO2 Particle Surfaces Has Implications for Environmental DNA

    • This collection contains data used in publication and is linked with figure numbers. Data contains ATR-FTIR spectroscopic data, pH measurements and UV-vis measurements.
    • Date: 2023-08 to 2025-05
  15. Collection

    Data from: The Missing Voices of #MeToo: Examining the Intersectionality of Digital Feminism in India

    • A literature review of 23 sources was conducted to assess the intersectionality of #MeToo in India. The first sheet on the data file lists the 53 sources subject to full text review. The second sheet sorts the extracted information into 75 variables.
    • Date: 2023-03 to 2023-06
  16. Collection

    Global Navigation Satellite System (GNSS) Airborne Radio Occultation (ARO) Observations from the Atmospheric River Reconnaissance Field Campaigns

    • Airborne radio occultation (ARO) observations were retrieved from the research aircraft (NOAA G-IV and AFRC WC-130s) deployed in the atmospheric river reconnaissance campaigns. The research flights were conducted over a wide area over the Pacific, from the US west coast to Guam.
    • Date: 2018 to present
  17. Collection

    Data from: Singlet Carbenes are Stereoinductive Main Group Ambiphiles

    • All output files for reactants, products, reaction intermediates, and transition states involved in insertion of chiral cyclic(alkyl)(amino)carbenes to E-H bonds. Additionally, output files from the simulation of NMR spectra for select products.
    • Date: 2024-05 to 2025-01
  18. Collection

    Data from: The 1991 California 'Miracle March': Precipitation Myth or Miracle?

    • This collection contains the data and code necessary to reproduce the plots and analysis for "The 1991 California “Miracle March”: Precipitation Myth or Miracle?", published in Environmental Research Communications by Poulsen et al. (2025).
    • Date: 1900 to 2023
  19. Collection

    Data from: Spatial and temporal structure of the fog life cycle over Atlantic Canada and the Grand Banks

    • This collection contains the ocean and atmospheric data collected over 71 years over Atlantic Canada and the Grand Banks that was used to generate the figures from Formby-Fernandez et. al (2024).
    • Date: 1950 to 2020
  20. Collection

    Data from: Measuring Estuarine Total Exchange Flow from Discrete Observations

    • Matlab code for calculating Total Exchange Flow (TEF) using data from the three estuary models. Calculation scripts for five different methods as described in “Measuring Estuarine Total Exchange Flow from Discrete Observations” are included.
    • Date: 2005 to 2012
  21. Collection

    Data from: Observing Ocean-Atmosphere Fluxes From Autonomous Surface Vehicles

    • This collection contains raw and processed data collected from the Research platform FLIP and by two Wave Gliders during the ONR funded Langmuir Cell DRI experiment conducted in Spring 2017 off the coast of Southern California.
    • Date: 2017-03-21 to 2017-04-06
  22. Collection

    Data from: Flooding Projections due to Groundwater Emergence Caused by Sea Level Variability

    • Processed RBR solo pressure data, CTD density profiles, and atmospheric pressure-corrected GWT measurements from four groundwater monitoring wells in Imperial Beach, CA, (Dec 2021-May 2024) used to study sea level impact on flood risks.
    • Date: 2021-12-08 to 2024-05-14
  23. Collection

    Data from: Are AI weather models learning atmospheric physics? A sensitivity analysis of cyclone Xynthia

    • This collection contains the data for the manuscript titled "Are AI Weather Models Learning Atmospheric Physics? A Sensitivity Analysis of Cyclone Xynthia", which is necessary to reproduce the results presented.
    • Date: 2024
  24. Collection

    Fish Length-Weight Parameters

    • This collection contains fish length-weight data and parameters from various life history projects conducted by the Sandin Lab at Scripps Institution of Oceanography, UC San Diego.
    • Date: 2020 to present
  25. Collection

    A dataset of chronic nicotine-induced genes in HCC38 breast cancer cells

    • These data added value to our original research article by providing an unbiased view of the number and class of genes upregulated by nicotine in breast cancer cells.
    • Date: 2024
  26. Collection

    Chronobiologically-Informed Features from CGM Data Provide Unique Information for XGBoost Prediction of Longer-Term Glycemic Dysregulation in 8,000 Individuals with Type-2 Diabetes

    • This collection includes engineered features extracted from continuous glucose monitoring (CGM; Dexcom G6) in order to classify long-term glycemic dysregulation in a large, uncontrolled cohort over the course of a year. The goal of sharing these data are to encourage better algorithm development for predicting types of dysregulated days as well as within-individual dysregulation.
    • Date: 2022-04
  27. Collection

    Argo BathYmetry SenSing (ABYSS)

    • This collection contains locations, depths and times of ocean bathymetry detection using Deep Argo floats, along with estimated horizontal displacements.
    • Date: 2014 to present
  28. Collection

    Data from: Airborne remote sensing of concurrent submesoscale dynamics and phytoplankton

    • This archive contains the code and data needed to generate the figures in the publication: "Airborne remote sensing of concurrent submesoscale dynamics and phytoplankton" (Lang, Sarah E.; Omand, Melissa M.; Lenain, Luc). Data presented was collected as part of the Submesoscale Ocean Dynamics Experiment (S-MODE).
    • Date: 2021-10-29 to 2021-10-30
  29. Collection

    Data from: Inferring free surface disturbance properties from Kelvin wakes using convolutional neural network

    • Surface elevation data for training the convolutional neural networks.
    • Date: 2023
  30. Collection

    Eliminating In-Home Smoking project–urinary biomarker evidence of tobacco and cannabis smoke exposure of children

    • Real-time feedback alerts for elevated in-home air particle concentrations to reduce child secondhand smoke exposure, as measured by biomarkers of nicotine and THC.
    • Date: 2012 to 2015; 2019 to 2022
  31. Collection

    California Imaging FlowCytobot Network (CA IFCB Network)

    • The California Imaging Flowcytobot Network (CA IFCB Network) is a statewide network of automated in situ phytoplankton measurements to aid implementation of an automated early warning system for the detection of potential Harmful Algal Blooms (HABs).
    • Date: 2016 to 2024
  32. Collection

    Data from: Advanced Monitoring of Subsurface Sediment Structures Within Gravel Berms

    • This collection contains research dataset used to study seasonal changes in gravel berm topography and subsurface sediments in Torrey Pines State Beach and South Carlsbad State Beach in San Diego North County.
    • Date: 2023-03 to 2023-10
  33. Collection

    Supplemental large-area imaging data from: Groundtruthing assessments of lab-based coral thermal tolerance with large-area imaging

    • This collection includes the supplemental large-area imaging (LAI) data from a study conducted on three reefs in southern Taiwan with different thermal histories. The study compared in-situ LAI monitoring with ex-situ experiments with the goal of groundtruthing the experimental results.
    • Date: 2022-04-20 to 2022-09-23
  34. Collection

    Hornsund Fjord 2023: Broadband Active Acoustic and Oceanographic Data

    • This is a data set containing broadband active acoustic and oceanographic data collected in Hornsund Fjord, Svalbard.
    • Date: 2023-07-07 to 2023-07-12
  35. Collection

    Data from: A new method for diagnosing effective radiative forcing from aerosol-cloud interactions in climate models

    • This dataset includes a new method for estimating shortwave ERFaci from liquid clouds using cloud radiative kernels and MODIS joint histograms, offering insights into the Twomey effect, liquid water path, and cloud fraction adjustments.
    • Date: 2024
  36. Collection

    Faces of select bees from San Diego, CA

    • A collection of photographs featuring the faces of bees from San Diego, CA, showcasing the diversity of native bees inhabiting Southern California's bee biodiversity hotspot.
    • Date: 2011 to 2014
  37. Collection

    Data from: Subaerial Profiles at Two Beaches: Equilibrium and Machine Learning

    • This collection contains observations of beach elevation and model derived wave statistics from two locations in San Diego County: Torrey Pines State Beach and Black’s Beach (La Jolla, CA).
    • Date: 2015-01 to 2023-12
  38. Collection

    Green New Deal at UC San Diego

    • A collection of documents and other media recording the campaigns of the Green New Deal at UC San Diego, a grassroots climate justice organization that successfully lobbied the UC to transform its climate change policies.
    • Date: 2019 to 2024
  39. Collection

    Data from: Genuine Carbene Versus Carbene-Like Reactivity

    • Optimized geometries, frequencies, and single point calculations for reactants, products, reaction intermediates, and transition states involved in forming cyclic(aryl)(amino)carbene-metal complexes and decomposition products.
    • Date: 2023-04 to 2023-11
  40. Collection

    Data from: Evaluating the trustworthiness of explainable artificial intelligence (XAI) methods applied to regression predictions of Arctic sea ice motion

    • This dataset provides processed satellite and reanalysis data on sea-ice motion in the Arctic, along with statistical model predictions. It also includes code for processing the data, aimed at facilitating explainable AI analysis of model predictions.
    • Date: 1989 to 2021
  41. Collection

    The Catalyst at UC San Diego

    • The Catalyst, founded summer of 2021, is an inclusive, open access paper series under the Undergraduate Research Hub at UCSD which aims to empower the voices of students who have a passion for conducting research.
    • Date: 2021 to present
  42. Collection

    California Proposition 56 Evaluation

    • This collection includes biennial and technical reports assessing changes in tobacco-related indicators for California’s populations pre-and post-Proposition 56.
    • Date: 2022-07-01 to present
  43. Collection

    Data from: Quantifying Bioluminescent Light Intensity in Breaking Waves using Numerical Simulations

    • This collection features velocity, volume fraction, and velocity gradient data interpolated onto a uniform Cartesian grid, along with Basilisk code for simulating breaking waves and Julia code for simulating bioluminescence.
    • Date: 2024
  44. Collection

    California American Indian Tobacco Initiative Evaluation (CAITIE)

    • This collection includes reports, dissemination materials, methodological materials, and data associated with the the California American Indian Tobacco Initiative Evaluation (CAITIE).
    • Date: 2019
  45. Collection

    Data from: Multiscale Modeling Shows How 2'-deoxy-ATP Rescues Ventricular Function in Heart Failure

    • Molecular dynamics simulations of myosin (1QVI) carried out with either ATP or dATP bound from the manuscript "Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure"
    • Date: 2020 to 2022
  46. Collection

    Data from: Prediction of Threonine-Tyrosine Kinase Receptor-Ligand Unbinding Kinetics with Multiscale Milestoning and Metadynamics

    • Heat shock protein 90 (HSP90) and threonine tyrosine kinase (TTK) simulation enabled estimation of kinetic rates (SEEKR) calculations using both steered molecular dynamics and metadynamics.
    • Date: 2022-05 to 2024-06
  47. Collection

    Measurements and Analysis Products from Baselining the Indirect Effect by Improving Quantification of Sea Spray and Marine Sources at Ascension Island during LASIC

    • This collection provides data and codes used to retrieve aerosol mode fitting parameters, Hoppel minimum diameters from measured particle size distributions, cloud supersaturations, and cloud microphysical properties during the ARM LASIC campaign.
    • Date: 2020 to 2024
  48. Collection

    Data from: Observations and Numerical Simulations of the Onset and Growth of Langmuir Circulations

    • This collection contains data from observations and numerical simulations of Langmuir circulations, along with the relevant routines to generate figures in Andriatis et al. 2024.
    • Date: 2020-11-04 to 2020-11-25
  49. Collection

    Data from: Characterizing Non-phase-locked Tidal Currents in the California Current System using High-frequency Radar

    • Processed time series from HFR, power spectra from HFR, and fitted harmonic constituents from analyzed HFR. Data from a bottom pressure sensor used in suppl. Scripts used in the study to analyze and process data and to make visualizations.
    • Date: 2012-01-01 to 2021-04-01
  50. Collection

    Data from: NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation

    • This collection contains trajectory and molecular dynamics simulation output data for NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation.
    • Date: 2022-01-01 to 2024-04-01