Microscopy product ID: 3431
2D Image
Description | Zero tilt image of a 0.5 um thick section of a blue green algae cell taken with intermediate voltage electron microscopy. Contrast is reversed so that electron dense structures appear bright. |
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Description | Tar file containing digitized unaligned tilt images (compressed) in suprim format (*.f.Z) along with the fiducial mark file (.fido) and a list of the angles used for reconstruction (.ang). |
Segmentation
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Description | Xvoxtrace 2.7 file containing manual tracing of outer wall contours. |
Reconstruction
Description | Single computed slice of a tomographic volume of a chloroplast contained in a blue green algae cell grown under high light conditions. The pyrenoid is very prominent, although the thylakoid membranes are difficult to resolve. |
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Description | Tar file containing two volume files in Analyze 7.5 format: Phaeo26_Obliques78.img/hdr. This volume file was produced by resectioning the original volume in an oblique plane using the oblique section function of Analyze. |
Animation
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Description | Animation through the computed slices of a tomographic volume of a chloroplast contained in a blue green algae cell grown under high light conditions. The pyrenoid is very prominent, although the thylakoid membranes are difficult to resolve. |
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- Collection
- Cite This Work
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Moisan, Tiffany; Sosinsky, Gina; Buitenhuys, Casey; Ellisman, Mark H. (2017). Microscopy product ID: 3431. In Cell Centered Database. UC San Diego Library Digital Collections. https://doi.org/10.6075/J0JM29DG
- Date Issued
- 2017
- Research Team Head
- Researchers
- Technical Details
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Product type: SINGLE TILT. Microscopy type: IVEM. Instrument: JEOL 4000EX IVEM
Strain: Karsten
- Funding
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National Aeronautics and Space Administration
- Series
- Scientific Name
- Anatomy
- Topic
Formats
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- Language
- No linguistic content; Not applicable
- Related Resources
- Moisan TA, Ellisman MH, Buitenhuys CW, Sosinsky GE (2006). Differences in chloroplast ultrastructure of Phaeocystis antarctica in low and high light. Marine Biology, 149(6):1281-1290. https://doi.org/10.1007/s00227-006-0321-5
- Microscopy product 3431 at the Cell Centered Database: https://doi.org/10.7295/W9CCDB3431
Primary associated publication
Other version
- License
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Creative Commons Attribution 4.0 International Public License
- Rights Holder
- UC Regents
- Copyright
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Under copyright (US)
Use: This work is available from the UC San Diego Library. This digital copy of the work is intended to support research, teaching, and private study.
Constraint(s) on Use: This work is protected by the U.S. Copyright Law (Title 17, U.S.C.). Use of this work beyond that allowed by "fair use" or any license applied to this work requires written permission of the copyright holder(s). Responsibility for obtaining permissions and any use and distribution of this work rests exclusively with the user and not the UC San Diego Library. Inquiries can be made to the UC San Diego Library program having custody of the work.
- Digital Object Made Available By
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Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (https://lib.ucsd.edu/rdcp)
- Last Modified
2023-05-22