Microscopy product ID: 3649
2D Image
Description | Zero degree tilt electron micrograph from a tilt series of high pressure frozen cerebellar tissue imaged using intermediate voltage electron microscopy. The contrast has been adjusted and the image downsampled from 16 bit to 8 bit for display purposes. |
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Description | Tar file containing original digitized TIFF images, IMOD files (*com, *log, st, preali, fid, rawtlt,...), and TxBR files (*mat, *txt, preali, rawtlt, fid, ...) of high pressure frozen Cerebellar tissue, showing PSD and vesicles. |
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Description | Aligned tilt series of a slice of high pressure frozen cerebellar tissue imaged using intermediate voltage electron microscopy |
Reconstruction
Description | Single computed slice through a tomographic reconstruction of neuropil from the molecular layer of the cerebellar cortex from tissue that was prepared from a combination of chemical fixation and high pressure freezing. The contrast was adjusted and the image downsampled to 8 bits from the submitted data for display purposes. |
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Description | Tar file containing TxBR (projective) combined tomographic volume of high pressure frozen cerebellar tissue in IMOD format. Three versions of the volume are included: the full resolution version HPFcere_full.rec; a trimmed version HPFcere_trim2.rec and a trimmed downsampled version HPFcere_trimmed.rec_bin2. Note that the volumes are stored in the X-Z orientation. These files are very large > 6 Gb for tar file so the download will take a long time. |
Animation
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Description | Animation of a tomographic reconstruction of of neuropil from the molecular layer of the cerebellar cortex from tissue that was prepared from a combination of chemical fixation and high pressure freezing. |
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- Cite This Work
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Ellisman, Mark H.; Sosinsky, Gina; Jones, Ying (2017). Microscopy product ID: 3649. In Cell Centered Database. UC San Diego Library Digital Collections. https://doi.org/10.6075/J0XP74QF
- Creation Date
- Microscopy product: 2007-01-16. Experiment: 2006-08-17. Project: 2004-01-01.
- Date Issued
- 2017
- Research Team Heads
- Technical Details
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Male. Strain: Sprague Dawley
Product type: SINGLE TILT. Microscopy type: IVEM. Instrument: JEOL 4000 #1
- Funding
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NIH
- Series
- Scientific Name
- Anatomy
- Topic
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- Language
- No linguistic content; Not applicable
- Related Resources
- Sosinsky GE, Crum J, Jones YZ, Lanman J, Smarr B, Terada M, Martone ME, Deerinck TJ, Johnson JE, Ellisman MH (2008). The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications. J Struct Biol, 161(3):359-371. PubMed: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2459253/; Journal of Structural Biology. https://doi.org/10.1016/j.jsb.2007.09.002
- Microscopy product 3649 at the Cell Centered Database: https://doi.org/10.7295/W9CCDB3649
Primary associated publication
Other version
- License
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Creative Commons Attribution 4.0 International Public License
- Rights Holder
- UC Regents
- Copyright
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Under copyright (US)
Use: This work is available from the UC San Diego Library. This digital copy of the work is intended to support research, teaching, and private study.
Constraint(s) on Use: This work is protected by the U.S. Copyright Law (Title 17, U.S.C.). Use of this work beyond that allowed by "fair use" or any license applied to this work requires written permission of the copyright holder(s). Responsibility for obtaining permissions and any use and distribution of this work rests exclusively with the user and not the UC San Diego Library. Inquiries can be made to the UC San Diego Library program having custody of the work.
- Digital Object Made Available By
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Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (https://lib.ucsd.edu/rdcp)
- Last Modified
2023-05-22