Microscopy product ID: 3413
2D Image
Description | Zero degree tilt image of a 0.75 um thick section of blue green algae imaged using intermediate voltage electron microscopy. Contrast is reveresed so that electron dense structures appear bright. The small bright particles are colloidal gold particles that were placed on the section surface to serve as fiducial cues. Contrast was enhanced from original data for display purposes. |
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Description | Zip file containing the unaligned, full size digitized images (*.f), the aligned full size images (*.s), the aligned cropped images used for reconstruction (*.crop) along with the normalized (*.norm) and radius weighted (*.w) images used for reconstruction. Also included are the fiducial mark file (*.fido) and the list of angles used for reconstruction (*.ang). This file is ~ 300 Mb in size. |
Reconstruction
Description | Single computed x-y slice through a tomographic volume of the chloroplast of a blue green algae exposed to low light conditions. The quality of the reconstruction is not very good due to alignment difficulties. |
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Description | Zip file containing volume file in Analyze 7.5 format. Gtomo outputs the volume as a series of slices in the x-z plane. The volume has not been resliced in the xy plane. Curator's note: the quality of the reconstruction is not very good; it looks like there were alignment difficulties. |
Animation
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Description | Animation through the slices in the xy plane of a tomographic volume of blue green algae exposed to low light conditions. |
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- Collection
- Cite This Work
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Moisan, Tiffany; Sosinsky, Gina; Buitenhuys, Casey; Ellisman, Mark H. (2017). Microscopy product ID: 3413. In Cell Centered Database. UC San Diego Library Digital Collections. https://doi.org/10.6075/J02J6BNH
- Date Issued
- 2017
- Research Team Head
- Researchers
- Technical Details
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Product type: SINGLE TILT. Microscopy type: IVEM. Instrument: JEOL 4000EX IVEM
Strain: Karsten
- Funding
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National Aeronautics and Space Administration
- Series
- Scientific Name
- Anatomy
- Topic
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- Language
- No linguistic content; Not applicable
- Related Resources
- Moisan TA, Ellisman MH, Buitenhuys CW, Sosinsky GE (2006). Differences in chloroplast ultrastructure of Phaeocystis antarctica in low and high light. Marine Biology, 149(6):1281-1290. https://doi.org/10.1007/s00227-006-0321-5
- Microscopy product 3413 at the Cell Centered Database: https://doi.org/10.7295/W9CCDB3413
Primary associated publication
Other version
- License
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Creative Commons Attribution 4.0 International Public License
- Rights Holder
- UC Regents
- Copyright
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Under copyright (US)
Use: This work is available from the UC San Diego Library. This digital copy of the work is intended to support research, teaching, and private study.
Constraint(s) on Use: This work is protected by the U.S. Copyright Law (Title 17, U.S.C.). Use of this work beyond that allowed by "fair use" or any license applied to this work requires written permission of the copyright holder(s). Responsibility for obtaining permissions and any use and distribution of this work rests exclusively with the user and not the UC San Diego Library. Inquiries can be made to the UC San Diego Library program having custody of the work.
- Digital Object Made Available By
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Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (https://lib.ucsd.edu/rdcp)
- Last Modified
2023-05-22