Microscopy product ID: 7503
Segmentation
Description | Manual segmentation of astrocyte soma and associated organelles using IMOD 3.13.5 |
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Full resolution data file
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Description | Manual segmentation of major structures in astrocyte cell soma from a serial reconstruction in IMOD model format |
Reconstruction
Description | Single computed slice through a serial tomogram consisting of 26 single tilt tomographic reconstructions of the soma of an astrocyte in stratum radiatum of hippocampal area CA1 of an adult mouse. The final volume was binned 8X from the original resolution because of the large size. Each of the full resolution reconstructions of single slices are available as separate Microscopy Products. |
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Down sampled data file
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Description | bin by 8 tomographic reconstruction of 26 serial sections of astrosoma collected on 4000#2 (with 8k x 8k CCD camera) |
Animation
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Description | Animation through the serial tomogram of 26 single tilt tomographic reconstructions of the soma of an astrocyte in stratum radiatum of hippocampal area CA1 of an adult mouse along with segmentations of key structures. The reconstruction was downsampled for ease of display. |
Full metadata
- Collection
- Cite This Work
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Ellisman, Mark H.; Larson, Stephen; Maynard, Sarah; Bushong, Eric A.; Martone, Maryann (2017). Microscopy product ID: 7503. In Cell Centered Database. UC San Diego Library Digital Collections. https://doi.org/10.6075/J0Z89C70
- Creation Date
- Experiment: 2009-10-01. Project: 2009-08-05.
- Date Issued
- 2017
- Research Team Heads
- Researchers
- Technical Details
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Male. Strain: C57BL/6NHsd
Product type: SERIAL TOMOGRAM. Microscopy type: IVEM. Instrument: JEOL 4000
- Funding
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Ted Waitt Family Foundation
- Series
- Scientific Name
- Anatomy
- Topic
Formats
View formats within this collection
- Language
- No linguistic content; Not applicable
- Related Resource
- Microscopy product 7503 at the Cell Centered Database: https://doi.org/10.7295/W9CCDB7503
Other version
- License
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Creative Commons Attribution 4.0 International Public License
- Rights Holder
- UC Regents
- Copyright
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Under copyright (US)
Use: This work is available from the UC San Diego Library. This digital copy of the work is intended to support research, teaching, and private study.
Constraint(s) on Use: This work is protected by the U.S. Copyright Law (Title 17, U.S.C.). Use of this work beyond that allowed by "fair use" or any license applied to this work requires written permission of the copyright holder(s). Responsibility for obtaining permissions and any use and distribution of this work rests exclusively with the user and not the UC San Diego Library. Inquiries can be made to the UC San Diego Library program having custody of the work.
- Digital Object Made Available By
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Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (https://lib.ucsd.edu/rdcp)
- Last Modified
2023-05-22