Microscopy product ID: 3424
2D Image
Description | Zero degree tilt image of a 0.25 um thick section of blue green algae grown under high light conditions, imaged with intermediate voltage electron microscopy. Contrast is reversed so that electron dense structures appear bright. |
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Description | Zip file containing the compressed full size digitized unaligned images (*.f.gz) in suprim format, along with the fiducial mark file used to align them (*.fido), the origin file (*.origin) and a list of the angles used for reconstruction (*.ang). |
Segmentation
Description | Manual segmentation of thylakoid membranes and other cellular structures using Xvoxtrace 2.1, followed by surfacing using the nuages algorithm and Synu. |
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Reconstruction
Description | Computed slice through tomographic reconstruction of blue green algae grown under high light conditions. |
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Description | Zip file containing volume file in Analyze 7.5 format (both .img and .hdr) files, used for segmentation. |
Animation
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Description | Animation through the computed slices of a tomographic reconstruction of a blue green algae grown under high light conditions. |
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- Collection
- Cite This Work
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Moisan, Tiffany; Sosinsky, Gina; Buitenhuys, Casey; Ellisman, Mark H. (2017). Microscopy product ID: 3424. In Cell Centered Database. UC San Diego Library Digital Collections. https://doi.org/10.6075/J06973C7
- Date Issued
- 2017
- Research Team Head
- Researchers
- Technical Details
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Product type: SINGLE TILT. Microscopy type: IVEM. Instrument: JEOL 4000EX IVEM
Strain: Karsten
- Funding
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National Aeronautics and Space Administration
- Series
- Scientific Name
- Anatomy
- Topic
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- Language
- No linguistic content; Not applicable
- Related Resources
- Moisan TA, Ellisman MH, Buitenhuys CW, Sosinsky GE (2006). Differences in chloroplast ultrastructure of Phaeocystis antarctica in low and high light. Marine Biology, 149(6):1281-1290. https://doi.org/10.1007/s00227-006-0321-5
- Microscopy product 3424 at the Cell Centered Database: https://doi.org/10.7295/W9CCDB3424
Primary associated publication
Other version
- License
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Creative Commons Attribution 4.0 International Public License
- Rights Holder
- UC Regents
- Copyright
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Under copyright (US)
Use: This work is available from the UC San Diego Library. This digital copy of the work is intended to support research, teaching, and private study.
Constraint(s) on Use: This work is protected by the U.S. Copyright Law (Title 17, U.S.C.). Use of this work beyond that allowed by "fair use" or any license applied to this work requires written permission of the copyright holder(s). Responsibility for obtaining permissions and any use and distribution of this work rests exclusively with the user and not the UC San Diego Library. Inquiries can be made to the UC San Diego Library program having custody of the work.
- Digital Object Made Available By
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Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (https://lib.ucsd.edu/rdcp)
- Last Modified
2023-05-22