Microscopy product ID: 8139
2D Image
| Description | Single tilt image from a single axis tilt series through mitochondria at the Node of Ranvier of peripheral nerve root from rat. The dark speckles are gold particles that were applied to the surfaces to serve as fiducial marks for subsequent alignment. |
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| Description | Stacked unaligned raw images in IMOD format |
Segmentation
| Description | Manual segmentation of mitochondrial outer membrane and cristae using Xvoxtrace 2.17 |
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| Description | Zip file containing the manual tracings in Xvoxtrace (.trace) along with the surface rendered objects in synu format (.synu) and the Viewdata file required by Synu. Segementations were performed on the Analyze 7.5 version of the reconstruction available from the reconstruction download section. The Xvoxtrace and Synu programs that were used to create this data are no longer supported. The Jinx tool (see CCDB tool list) can read the Xvoxtrace format and export the surfaces in multiple formats. |
Reconstruction
| Description | Single computed slice through a tomographic volume of mitochondria at the Node of Ranvier in rat peripheral nerve root |
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| Description | Zip file containing the tomographic reconstruction in Analyze 7. 5 (hdr.img/hdr) and IMOD (.rec) format |
Animation
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| Description | Animation of the computed slices through a tomographic volume of mitochondria at the Node of Ranvier in rat peripheral nerve root |
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- Collection
- Cite This Work
-
Ellisman, Mark H.; Perkins, Guy A. (2017). Microscopy product ID: 8139. In Cell Centered Database. UC San Diego Library Digital Collections. https://doi.org/10.6075/J03T9H25
- Creation Date
- Project: to 2010-05-18.
- Date Issued
- 2017
- Research Team Heads
- Technical Details
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Male. Strain: Sprague Dawley
Product type: SINGLE TILT. Microscopy type: IVEM. Instrument: JEOL 4000EX
- Funding
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National Institute of Neurological Disorders and Stroke, National Center for Research Resources, National Institute of Diabetes and Kidney Diseases, National Library of Medicine
- Series
- Scientific Name
- Anatomy
- Topic
Formats
View formats within this collection
- Language
- No linguistic content; Not applicable
- Related Resources
- Perkins GA, Ellisman MH (2011). Mitochondrial configurations in peripheral nerve suggest differential ATP production. Journal of Structural Biology, 173(1):117-127. PubMed: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3078762/; Journal of Structural Biology. https://doi.org/10.1016/j.jsb.2010.06.017
- Microscopy product 8139 at the Cell Centered Database: https://doi.org/10.7295/W9CCDB8139
Primary associated publication
Other version
- License
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Creative Commons Attribution 4.0 International Public License
- Rights Holder
- UC Regents
- Copyright
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Under copyright (US)
Use: This work is available from the UC San Diego Library. This digital copy of the work is intended to support research, teaching, and private study.
Constraint(s) on Use: This work is protected by the U.S. Copyright Law (Title 17, U.S.C.). Use of this work beyond that allowed by "fair use" or any license applied to this work requires written permission of the copyright holder(s). Responsibility for obtaining permissions and any use and distribution of this work rests exclusively with the user and not the UC San Diego Library. Inquiries can be made to the UC San Diego Library program having custody of the work.
- Digital Object Made Available By
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Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (https://lib.ucsd.edu/rdcp)
- Last Modified
2023-05-22