Martin-King, Chloe; Nael, Ali; Ehwerhemuepha, Louis; Calvo, Blake; Gates, Quinn; Janchoi, Jamie; Ornelas, Elisa; Perez, Melissa; Venderby, Andrea; Miklavcic, John; Chang, Peter; Grant, Kenneth (2024). CIL:56371, Homo sapiens. In Cell Image Library. UC San Diego Library Digital Collections. Dataset. https://doi.org/10.6075/J09887BD

Scan 22_D_ED_C -- The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide​​, TiffSlide, and QuPath​​.

• 2024

• Calvo, Blake
• Chang, Peter
• Ehwerhemuepha, Louis
• Gates, Quinn
• Grant, Kenneth
• Janchoi, Jamie
• Martin-King, Chloe
• Miklavcic, John
• Nael, Ali
• Ornelas, Elisa
• Perez, Melissa
• Venderby, Andrea

Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.

Imaging mode: Static digital pathology tissue scans
Visualization methods: Hematoxylin and eosin

• Cell Image Library Group ID: 20126

• Homo sapiens

• Pediatric inflammatory bowel disease

• data
• image
• text

• No linguistic content; Not applicable

Samplenumber: 56371

Doi: https://doi.org/10.6075/J09887BD

Source data

• Source Record in the Cell Image Library: https://doi.org/10.7295/W9CIL56371

Reference

• CHOC Research Institute - Children's Hospital of Orange County: https://www.choc.org/research/
• Martin-King, Chloe; Nael, Ali; Ehwerhemuepha, Louis; Calvo, Blake; Gates, Quinn; Janchoi, Jamie; Ornelas, Elisa; Perez, Melissa; Venderby, Andrea; Miklavcic, John; Chang, Peter; Grant, Kenneth (2024). Patient and section data accompanying Pediatric Inflammatory Bowel Disease dataset. In Cell Image Library. UC San Diego Library Digital Collections. Dataset. https://doi.org/10.6075/J0474B2N

Creative Commons Attribution 4.0 International Public License

• UC Regents

Under copyright (US)

Use: This work is available from the UC San Diego Library. This digital copy of the work is intended to support research, teaching, and private study.

Constraint(s) on Use: This work is protected by the U.S. Copyright Law (Title 17, U.S.C.). Use of this work beyond that allowed by "fair use" or any license applied to this work requires written permission of the copyright holder(s). Responsibility for obtaining permissions and any use and distribution of this work rests exclusively with the user and not the UC San Diego Library. Inquiries can be made to the UC San Diego Library program having custody of the work.

Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (https://lib.ucsd.edu/rdcp)

2025-01-31