Collections »

About this collection

Extent

6 digital objects.

Cite This Work

Palmer, Abraham A. (2023). Genotype data from: NIDA Center for GWAS in Outbred rats. UC San Diego Library Digital Collections. https://doi.org/10.6075/J0KS6RQF

Description

This collection contains genotype data collected as part of the NIDA Center for GWAS in Outbred rats and more than 10 additional research projects that use N/NIH heterogeneous stock (HS) outbred rats. We obtain genotypes for DNA samples derived from rats that are phenotyped by different research projects. We use these genotypes to perform genome wide association studies (GWAS) and a number of related analyses.

Scope And Content

We release updated data every 2-3 months, and provide detailed information on our genotyping pipeline in the Readme file associated with the object.

Date Collected

• 2014 to present

Date Issued

• 2023

Director

• Palmer, Abraham A.

Principal Investigator

• Palmer, Abraham A.

Funding

NIDA center for genetic studies of drug abuse in outbred rats (P50DA037844).

Topics

• Biological sciences
• Genetics
• Genotyping-by-sequencing (GBS)
• Heterogeneous stock (HS) rats
• Imputation
• Low-Coverage Whole Genome Sequencing (lc-WGS)
• Rat

Formats

View formats within this collection

• data
• text

Language

• English

Identifier

Doi: https://doi.org/10.6075/J0KS6RQF

Related Resource

Other resource

• Palmer, Abraham A. (2023). The Center for GWAS in Outbred Rats Database (C-GORD). UC San Diego Library Digital Collections. https://doi.org/10.6075/J0MS3SZ5
• Rat Genes (ratgenes.org)