Browse by Collection: UCSD Research Data Collections

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1. 
   Collection

   Standard Operating Procedure Documents for Coral Reef Ecological Monitoring

   • This collection contains documents describing methods used by the Sandin Lab to collect standardized coral reef community ecology data.
   • Date: 2010 to Present
2. 
   Collection

   California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic and Trawl Data

   • This is a voluminous data set containing acoustic and trawl data collected on CalCOFI (California Cooperative Oceanic Fisheries Investigations) cruises.
   • Date: 2009 to 2015
3. 
   Collection

   CAVEcam Virtual Reality Photography Collection

   • Full-surround 3-D images make up this collection of original and rendered composite images called CAVEcams which are very high-resolution images for both left and right eye, normally viewed in virtual reality systems, either CAVEs or HMDs.
   • Date: 2009 to 2016
4. 
   Collection

   Atmospheric Aerosol Submicron Particle Composition including Organic Functional Group Concentrations at Arctic Locations

   • This collection includes separate data sets of atmospheric aerosol submicron particle composition that include organic functional group concentrations at locations within the Arctic.
   • Date: 2008 to 2014
5. 
   Collection

   Keith Rayner Eye Movements in Reading Data Collection

   • This collection consists of data and materials from a subset of published eye movement studies of reading conducted in Keith Rayner’s Eyetracking Lab at UCSD from 2008-2015
   • Date: 2008 to 2015
6. 
   Collection

   SeaFET & SeapHOx

   • Documentation for SeaFET and SeapHOx oceanographic sensors.
   • Date: 2008 to 2021
7. 
   Collection

   Data from: Using a Lagrangian particle tracking model to evaluate impacts of El Niño-related advection on euphausiids in the southern California Current System

   • These supplemental animations depict particle backtracks for six euphausiid species sampled in the southern California Current System in spring, 2008-2017. The particle model runs four months backward to determine winter water mass origins.
   • Date: 2007-11-01 to 2017-03-31
8. 
   Collection

   Western Pacific Atmospheric River Object Data from MODE detection software using West-WRF, GEFS, and MERRA-2

   • The collection contains NetCDF files of atmospheric river objects as processed through the Method for Object-based Diagnostic Evaluation software.
   • Date: 2006-12 to 2017-03
9. 
   Collection

   Abraham A. Palmer Lab Research Data Collection

   • We are studying the relationship between genotype and phenotype, especially behavioral phenotypes. Palmer Lab members collaborate on federally-funded projects that use a variety of species including humans, rats, mice, and zebrafish. A major focus of this work has been on developing and refining methods for genome-wide association studies (GWAS) in model organisms and integrating these results with expression QTLs (eQTL) and other -omics to identify specific and testable hypotheses about the relationship between genes and behavior.
   • Date: 2006 to present
10. 
    Collection

    Hydrographic Doppler Sonar System (HDSS): Acoustic ocean current profiling data from the R/V Revelle

    • The Hydrographic Doppler Sonar System on the R/V Revelle provides profiles of absolute ocean current and acoustic scattering strength in support of scientific operations with 50kHz & 140kHz sonars capable of sampling between 20m and 700–1100m and between 20m and 150–350m, respectively.
    • Date: 2006 to 2017
11. 
    Collection

    CLIvar and MOde water Dynamics Experiment (CLIMODE) and Antarctic Intermediate Water (AAIW) Float Data Archive

    • Calibrated and uncalibrated data from 12 Argo-equivalent, Webb Research ApexSBE profiling floats in the North Atlantic's Eighteen Degree Water region (CLIMODE), and southeast Pacific’s Subantarctic Mode Water region. Sensors: pressure, temperature, salinity, and Aanderaa optode oxygen.
    • Date: 2005-11-10 to 2008-05-21
12. 
    Collection

    Bee Research Methods: Video Demonstrations

    • This collection shows bee behaviors and methods used to study bee behaviors.
    • Date: 2005 to 2014
13. 
    Collection

    Daily POP Model Output over the Equatorial Indian Ocean

    • Daily POP Model output (2005-2009) extracted over the equatorial Indian Ocean.
    • Date: 2005 to 2009
14. 
    Collection

    Data from: Mechanisms of heat flux across the Southern Greenland continental shelf in 1/10° and 1/12° ocean/sea ice simulations

    • Volume and heat fluxes across the Greenland continental shelf in two eddy-active coupled ocean/sea-ice simulations.
    • Date: 2005 to 2009
15. Collection

    Data from: Seasonal cycle and annual reversal of the Somali Current in an eddy-resolving global ocean model

    • The dataset includes a subset of model output from a global 0.1-deg CORE-II forced POP simulation near the region of the Arabian Sea, supporting the Journal of Geophysical Research: Oceans article with the same name.
    • Date: 2005 to 2009
16. 
    Collection

    Data from: 'Whale Wave': shifting strategies structure the complex use of critical fjord habitat by humpbacks

    • This collection contains the data, R programming files, and detailed protocols for various aspects of analysis for the publication: Keen et al. 2016. "Whale Wave": shifting strategies structure the complex use of critical fjord habitat by humpbacks.
    • Date: 2005 to 2015
17. 
    Collection

    Santa Fe Light Cone Simulation research project files

    • This project was the result of an ongoing effort by the Laboratory for Computational Astrophysics, leading to development of the Enzo simulation software capable of a seven-level adaptive mesh refinement (AMR) cosmology simulation.
    • Date: 2005 to 2012
18. 
    Collection

    Teaching Bee

    • This collection of documents provides teaching exercises and information for instructors of students ranging from junior high school through college.
    • Date: 2005 to 2013
19. 
    Collection

    Khirbat en-Nahas Project (Jordan)

    • A collection of archaeological artifacts and data for the excavation of the Khirbat en-Nahas site, and exploration of Iron Age state formation in southern Jordan.
    • Date: 2002 to 2009
20. 
    Collection

    Scripps Argo Trajectory-Based Velocity Product

    • This collection contains absolute velocity estimates from quality controlled Argo trajectory files. Both Scripps trajectory products include trajectories from Core, BGC and Deep Argo floats starting in 2001. The Scripps trajectory products provide velocities between 800-1200 dbar or 100-6200 dbar.
    • Date: 2001 through 2020