Browse by Collection: UCSD Research Data Collections

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1. Collection

   Data from: Seasonal cycle and annual reversal of the Somali Current in an eddy-resolving global ocean model

   • The dataset includes a subset of model output from a global 0.1-deg CORE-II forced POP simulation near the region of the Arabian Sea, supporting the Journal of Geophysical Research: Oceans article with the same name.
   • Date: 2005 to 2009
2. 
   Collection

   Data from: 'Whale Wave': shifting strategies structure the complex use of critical fjord habitat by humpbacks

   • This collection contains the data, R programming files, and detailed protocols for various aspects of analysis for the publication: Keen et al. 2016. "Whale Wave": shifting strategies structure the complex use of critical fjord habitat by humpbacks.
   • Date: 2005 to 2015
3. 
   Collection

   Santa Fe Light Cone Simulation research project files

   • This project was the result of an ongoing effort by the Laboratory for Computational Astrophysics, leading to development of the Enzo simulation software capable of a seven-level adaptive mesh refinement (AMR) cosmology simulation.
   • Date: 2005 to 2012
4. 
   Collection

   Teaching Bee

   • This collection of documents provides teaching exercises and information for instructors of students ranging from junior high school through college.
   • Date: 2005 to 2013
5. 
   Collection

   CLIvar and MOde water Dynamics Experiment (CLIMODE) and Antarctic Intermediate Water (AAIW) Float Data Archive

   • Calibrated and uncalibrated data from 12 Argo-equivalent, Webb Research ApexSBE profiling floats in the North Atlantic's Eighteen Degree Water region (CLIMODE), and southeast Pacific’s Subantarctic Mode Water region. Sensors: pressure, temperature, salinity, and Aanderaa optode oxygen.
   • Date: 2005-11-10 to 2008-05-21
6. 
   Collection

   Abraham A. Palmer Lab Research Data Collection

   • We are studying the relationship between genotype and phenotype, especially behavioral phenotypes. Palmer Lab members collaborate on federally-funded projects that use a variety of species including humans, rats, mice, and zebrafish. A major focus of this work has been on developing and refining methods for genome-wide association studies (GWAS) in model organisms and integrating these results with expression QTLs (eQTL) and other -omics to identify specific and testable hypotheses about the relationship between genes and behavior.
   • Date: 2006 to present
7. 
   Collection

   Hydrographic Doppler Sonar System (HDSS): Acoustic ocean current profiling data from the R/V Revelle

   • The Hydrographic Doppler Sonar System on the R/V Revelle provides profiles of absolute ocean current and acoustic scattering strength in support of scientific operations with 50kHz & 140kHz sonars capable of sampling between 20m and 700–1100m and between 20m and 150–350m, respectively.
   • Date: 2006 to 2017
8. 
   Collection

   Western Pacific Atmospheric River Object Data from MODE detection software using West-WRF, GEFS, and MERRA-2

   • The collection contains NetCDF files of atmospheric river objects as processed through the Method for Object-based Diagnostic Evaluation software.
   • Date: 2006-12 to 2017-03
9. 
   Collection

   Data from: Estimates of extreme and low frequency reef-flat water levels at Ipan, Guam from offshore waves

   • This collection provides the reef face and shoreline bulk statistics and time series at Ipan, Guam used in Becker and Merrifield 2026.
   • Date: 2007 to 2016
10. 
    Collection

    Data from: Using a Lagrangian particle tracking model to evaluate impacts of El Niño-related advection on euphausiids in the southern California Current System

    • These supplemental animations depict particle backtracks for six euphausiid species sampled in the southern California Current System in spring, 2008-2017. The particle model runs four months backward to determine winter water mass origins.
    • Date: 2007-11-01 to 2017-03-31
11. 
    Collection

    Atmospheric Aerosol Submicron Particle Composition including Organic Functional Group Concentrations at Arctic Locations

    • This collection includes separate data sets of atmospheric aerosol submicron particle composition that include organic functional group concentrations at locations within the Arctic.
    • Date: 2008 to 2014
12. 
    Collection

    Keith Rayner Eye Movements in Reading Data Collection

    • This collection consists of data and materials from a subset of published eye movement studies of reading conducted in Keith Rayner’s Eyetracking Lab at UCSD from 2008-2015
    • Date: 2008 to 2015
13. 
    Collection

    SeaFET & SeapHOx

    • Documentation for SeaFET and SeapHOx oceanographic sensors.
    • Date: 2008 to 2021
14. 
    Collection

    California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic and Trawl Data

    • This is a voluminous data set containing acoustic and trawl data collected on CalCOFI (California Cooperative Oceanic Fisheries Investigations) cruises.
    • Date: 2009 to 2015
15. 
    Collection

    CAVEcam Virtual Reality Photography Collection

    • Full-surround 3-D images make up this collection of original and rendered composite images called CAVEcams which are very high-resolution images for both left and right eye, normally viewed in virtual reality systems, either CAVEs or HMDs.
    • Date: 2009 to 2016
16. 
    Collection

    Center for Aerosol Impacts on Chemistry of the Environment (CAICE)

    • A wide array of chemical, physical, and computational measurements, models, and data sets for laboratory-generated sea spray aerosols and model systems. Each item in the collection is associated with a published peer-reviewed manuscript.
    • Date: 2010 to present
17. 
    Collection

    Data from: DNA damage induced during mitosis undergoes DNA repair synthesis

    • A study of the DNA repair response to laser-induced DNA damage in selected mitotic chromosomes.
    • Date: 2010 to 2019
18. 
    Collection

    Data from: Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package

    • Data, functions, and scripts associated with "Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package" (Kachelein et al. 2022).
    • Date: 2010 to 2021
19. 
    Collection

    Standard Operating Procedure Documents for Coral Reef Ecological Monitoring

    • This collection contains documents describing methods used by the Sandin Lab to collect standardized coral reef community ecology data.
    • Date: 2010 to Present
20. 
    Collection

    Measurements of Generated and Ambient Marine Aerosol Particles in May and June 2010 on board the R/V Atlantis during the California Nexus (CalNex) Experiment

    • Measurements of generated marine aerosol particle physical and chemical properties.
    • Date: 2010-05-14 to 2010-06-08