Browse by Collection: UCSD Research Data Collections
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Collection
Data from: Airborne observations of surface winds, waves and currents from meso to submesoscales
- Coincident and collocated high-resolution observations of surface currents and directional properties of surface waves collected from an airborne instrument, the Modular Aerial Sensing System (MASS), collected off the coast of Southern California.
- Date: 2021-05-18 through 2021-11-05
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Collection
Data from: Airborne remote sensing of concurrent submesoscale dynamics and phytoplankton
- This archive contains the code and data needed to generate the figures in the publication: "Airborne remote sensing of concurrent submesoscale dynamics and phytoplankton" (Lang, Sarah E.; Omand, Melissa M.; Lenain, Luc). Data presented was collected as part of the Submesoscale Ocean Dynamics Experiment (S-MODE).
- Date: 2021-10-29 to 2021-10-30
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Collection
Data from: Allostery through the Computational Microscope: cAMP Activation of a Canonical Signalling Domain
- This collection contains the molecular dynamics trajectories scripts and models used in the paper “Allostery through the computational microscope: cAMP activation of a canonical signalling domain”.
- Date: 2014-08-24
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Collection
Data from: Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model
- This data collection represents all UH8to2 model data used for the publication "Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model". This includes ocean and sea ice characteristics from the 2017-2020 UH8to2 model run.
- Date: Model representation: 2017 to 2020
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Collection
Data from: Are AI weather models learning atmospheric physics? A sensitivity analysis of cyclone Xynthia
- This collection contains the data for the manuscript titled "Are AI Weather Models Learning Atmospheric Physics? A Sensitivity Analysis of Cyclone Xynthia", which is necessary to reproduce the results presented.
- Date: 2024
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Collection
Data from: Autumn precipitation: the competition with Santa Ana winds in determining fire outcomes in southern California
- This dataset includes two versions of the Santa Ana Wind Regional Index (SAWRI) and Livneh precipitation data from 1948-2018.
- Date: Compiled: 1948 to 2018
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Collection
Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization
- This collection integrates highly accurate 3D snapshots of Bodie's historic buildings before/after disturbance, or post-restoration, and other 3D geospatial data that were used to monitor and digitally preserve important cultural resources at Bodie California State Historic Park.
- Date: 2015 and 2020
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Collection
Data from: Calibrated absolute seafloor pressure measurements for geodesy in Cascadia
- Raw and corrected pressure data from campaign-style surveys of absolute calibrated sea pressure using an Absolute Self-Calibrating Pressure Recorder (ASCPR) in the Cascadia subduction zone from 2014 to 2017.
- Date: 2014 to 2017
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Collection
Data from: Carbon and Oxygen Isotopic Fractionation in the Products of Low-Temperature VUV Photodissociation of Carbon Monoxide
- Carbon and oxygen isotopic fractionation during photodissociation by VUV photons. This Matlab based model only calculates the isotope effect in the self-shielding process and not by any other means (e.g., predissociation). Data files are included.
- Date: 2016 to 2018
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Collection
Data from: Carbonic Anhydrases, EPF2 and a Novel Protease Mediate CO2 Control of Stomatal Development
- RNA-Seq experiments analyzing the Arabidopsis response to low and elevated carbon dioxide growing conditions were conducted to capture early signaling events as seedlings were adapting to stress.
- Date: 2012 to 2013
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Collection
Data from: Characterizing Non-phase-locked Tidal Currents in the California Current System using High-frequency Radar
- Processed time series from HFR, power spectra from HFR, and fitted harmonic constituents from analyzed HFR. Data from a bottom pressure sensor used in suppl. Scripts used in the study to analyze and process data and to make visualizations.
- Date: 2012-01-01 to 2021-04-01
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Collection
Data from: Climate change intensification of horizontal water vapor transport in CMIP5
- The dataset contains simulations of water vapor transport from 22 CMIP5 models including the historical, RCP4.5, and RCP8.5 runs.
- Date: 2014 to 2015
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Collection
Data from: Cobble Tracking Observations at Torrey Pines State Beach, CA, USA
- Wave data and cobble locations at Torrey Pines State Beach, San Diego, California.
- Date: 2021 to 2023
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Collection
Data from: Commitment Problems or Bidding Wars? Rebel Fragmentation as Peace Building
- This project uses an original dataset of field commanders in post-civil war Tajikistan to show that warlords from the victorious faction were as likely to be purged from the ruling coalition in a given year as warlords from the defeated faction.
- Date: 2012
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Collection
Data from: Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking
- All structures and RMSDs used in Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking are provided here.
- Date: 2017 to 2018
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Collection
Data from: Contrasting Local and Long-Range-Transported Warm Ice-Nucleating Particles During an Atmospheric River in Coastal California, USA
- Data, modeling results and analyses supporting research into meteorology and ice nucleating particles.
- Date: 2016-03-05 to 2018-05-01
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Collection
Data from: Cusp and mega cusp observations on a mixed sediment beach
- The dataset contains elevation rasters and gravel/cobble locations (North American Datum of 1983 (NAD 83), North American Vertical Datum of 1988 (NAVD 88)).
- Date: 2018 to 2019
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Collection
Data from: Cyclic(Alkyl)(Amino)Carbene Ligands Enable Cu-Catalyzed Markovnikov Protoboration and Protosilylation of Terminal Alkynes: A Versatile Portal to Functionalized Alkenes
- Included are the Gaussian output files (.chk, .fchk, and .log) from DFT calculations on the free carbenes explored in the protoboration and protosilylation of alkynes.
- Date: 2020 to 2021
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Collection
Data from: Diminished efficacy of regional marine cloud brightening in a warmer world
- Marine cloud brightening simulation output generated using the Community Earth System Model (CESM) version 2.2 described in Wan et al. (accepted).
- Date: 2022-04 to 2023-12
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Collection
Data from: DNA damage induced during mitosis undergoes DNA repair synthesis
- A study of the DNA repair response to laser-induced DNA damage in selected mitotic chromosomes.
- Date: 2010 to 2019
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Collection
Data from: Drift-Corrected Seafloor Vertical Deformation at Axial Seamount 2013-2014
- Data from a Self-Calibrating Pressure Recorder (SCPR) deployed at Axial Seamount from 2013 to 2015. This is seafloor height change (cm), converted from pressure (kPa), corrected for ocean tides and pressure gauge drift.
- Date: 2015-08-25
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Collection
Data from: Eddy-induced acceleration of Lagrangian floats
- Simulated Argo float positions computed using velocities from the Estimating the Circulation and Climate of the Ocean, Phase II (ECCO2) project.
- Date: 2016 to 2019
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Collection
Data from: Effect of atmospheric forcing resolution on simulated mixed layer depth in the North Pacific
- This dataset contains daily output from two eddying ocean simulations in the North Pacific. The two experiments have the same configuration except for the atmospheric forcing resolution.
- Date: 2014 to 2018
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Collection
Data from: Electrostatic interactions as mediators in the allosteric activation of PKA RIalpha
- Molecular dynamics input files, trajectories and analysis scripts used in the paper "Electrostatic interactions as mediators in the allosteric network of PKA RIalpha".
- Date: 2015-09-15
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Collection
Data from: Enhanced surf zone and wave runup observations with hovering drone-mounted LiDAR
- Drone LiDAR data obtained during the SCaRP field experiment of Winter 2019-2020 at Torrey Pines State Beach in San Diego, California, USA.
- Date: 2019-12-14 to 2020-02-24
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Collection
Data from: Episodic Southern Ocean heat loss and its mixed layer impacts revealed by the furthest south multi-year surface flux mooring
- This dataset contains Quality Controlled daily mean air-sea heat flux estimates from the NSF Ocean Observatories Initiative Southern Ocean mooring site for the period 2015 to 2017, as used in the analysis of Ogle et al. 2018 (doi:10.1029/2017GL076909)
- Date: 2015 to 2017
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Collection
Data from: Exploration and Explanation in Computational Notebooks
- Analysis of approximately 1.25 million Jupyter Notebooks downloaded from public repositories on GitHub in July 2017.
- Date: July 2017
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Collection
Data from: Feasibility of continuous fever monitoring using wearable devices
- Sixty-five continuous days of data at one-minute resolution covering fifty individuals reporting COVID-19 infections starting on day 45 in the data set.
- Date: 2020-03 to 2020-06
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Collection
Data from: Flooding Projections due to Groundwater Emergence Caused by Sea Level Variability
- Processed RBR solo pressure data, CTD density profiles, and atmospheric pressure-corrected GWT measurements from four groundwater monitoring wells in Imperial Beach, CA, (Dec 2021-May 2024) used to study sea level impact on flood risks.
- Date: 2021-12-08 to 2024-05-14
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Collection
Data from: Four Atmospheric Circulation Regimes Over the North Pacific and Their Relationship to California Precipitation on Daily to Seasonal Timescales
- This dataset contains four indices of daily atmospheric variability associated with four circulation regimes over the North Pacific, which have been identified as essential drivers of atmospheric river landfall variability and California precipitation.
- Date: 2018
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Collection
Data from: Genuine Carbene Versus Carbene-Like Reactivity
- Optimized geometries, frequencies, and single point calculations for reactants, products, reaction intermediates, and transition states involved in forming cyclic(aryl)(amino)carbene-metal complexes and decomposition products.
- Date: 2023-04 to 2023-11
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Collection
Data from: Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package
- Data, functions, and scripts associated with "Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package" (Kachelein et al. 2022).
- Date: 2010 to 2021
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Collection
Data from: Ice break-up controls dissipation of wind-waves across Southern Ocean sea ice
- In situ wave observations and WaveWatch III model output for Ardhuin et al. (2020).
- Date: 2018-05 to 2018-07
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Collection
Data from: Identification of weakly- to strongly-turbulent three-wave processes in a micro-scale system
- Height of water surface at center of 40uL sessile drop at 115,200fps for ~1s during actuation by ~7MHz thickness mode ultrasound. Each data set was taken at the indicated ultrasound input power level (from 0-350 mW).
- Date: 2021-11-28 to 2022-01-18
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Collection
Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App
- The purpose of this collection is to curate online all the 3D models and related metadata representing the three-dimensional stratigraphy of Çatalhöyük Building 89 as they are disseminated through the open source virtual reality application Dig@IT.
- Date: 2011 to 2015
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Collection
Data from: Impact of Atmospheric River Reconnaissance Dropsonde Data on the Assimilation of Satellite Data in GFS
- This collection are the satellite radiance data from the data denial experiments for the 2020 atmospheric river reconnaissance. The data are generated by the NCEP GDAS system during January 24 – March 18, 2020, corresponding to analyses in Zheng et al. 2022.
- Date: 2020-01-24 to 2020-03-18
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Collection
Data from: Impacts of Dropsonde Observations on Forecasts of Atmospheric Rivers and Associated Precipitation in the NCEP GFS and ECMWF IFS models
- ECMWF and NCEP IVT and precipitation data from control forecasts and data denial forecasts (without dropsondes assimilated) for Atmospheric River Reconnaissance (AR recon) 2019 and 2020.
- Date: 2019-02-01 to 2019-03-01 and 2020-01-24 to 2020-03-16
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Collection
Data from: Implications of Byproduct Chemistry in Nanoparticle Synthesis
- Absorption spectra of organic byproducts of tetrachloroaurate reduction by 2-(N-morpholino)ethanesulfonate (MES) were calculated via time-dependent density functional theory. These include small organic molecules, organic MES oligomers, and Au(I) complexes.
- Date: 2016 to 2018
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Collection
Data from: Improved Forecast Skill through the Assimilation of Dropsonde Observations from the Atmospheric River Reconnaissance Program
- This dataset are initial and boundary conditions generated by West-WRF implemented at Scripps Institution of Oceanography of UC San Diego for the Atmospheric River Reconnaissance dropsonde data denial experiments described in Zheng et al. 2021 (JGR). With this dataset, one should be able to repeat the WRF simulations for the NoDROP and WithDROP experiments using WRF V3.9.1.1.
- Date: 2016-02-14 to 2019-03-01
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Collection
Data from: Increasing STEM Undergraduate Participation in Innovative Activities: Field Experimental Evidence
- Measures of performance on an innovation contest by whether or not participants receive randomized encouragement, and whether participants self-selected into the contest or joined after receiving a monetary inducement for doing so.
- Date: 2017-01 to 2017-07
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Collection
Data from: Inferring free surface disturbance properties from Kelvin wakes using convolutional neural network
- Surface elevation data for training the convolutional neural networks.
- Date: 2023
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Collection
Data from: Influence of Carbene and Phosphine Ligands on the Catalytic Activity of Gold Complexes in the Hydroamination and Hydrohydrazination of Alkynes
- Several carbene structures and reaction intermediates for the Au catalyzed hydroamination of alkynes were calculated with Density Functional Theory Methods.
- Date: 2019 to 2020
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Collection
Data from: Instrumented Wave Gliders for Air-Sea Interaction and Upper Ocean Research
- This collection regroups data sets collected during four major field programs from 2013 to 2020 from a fleet of Wave Gliders specifically designed and instrumented for air-sea interaction and upper ocean observations by the Air-Sea Interaction Laboratory at Scripps Institution of Oceanography.
- Date: 2013 to 2020
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Collection
Data from: Interannual variations in meltwater input to the Southern Ocean from Antarctic ice shelves
- Height changes and basal melt rates of Antarctic ice shelves from satellite remote sensing, 1994–2018.
- Date: 1994 to 2018
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Collection
Data from: Internal tide structure and temporal variability on the reflective continental slope of southeastern Tasmania
- This collection contains in situ data (from 3 moorings and 1 CTD/LADCP station) from the Tasman Tidal Dissipation Experiment (T-TIDE) that was analyzed in Marques et al. (2020).
- Date: From 2015-01 to 2015-03
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Collection
Data from: Is the Mediterranean the New Rio Grande? U.S. and E.U. Immigration Pressures in the Long Run
- This project uses a gravity-style model to project bilateral migration flows for the next 40 years. It shows that Europe—unlike the US—will face substantial, demographically driven migration pressures from across the Mediterranean for decades to come.
- Date: 2016-01-01 to 2016-05-31
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Collection
Data from: Latent profile analysis of objectively measured sleep, physical activity, and sedentary time and associations with health in adult women
- This dataset represents the analysis variables for a group of 372 women collected at 4 different sites across the United States, including sleep quality, physical activity and sedentary behaviors.
- Date: 2012-10-10 to 2014-01-13
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Collection
Data from: Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo
- Microscopy data relative to measurements of cell sizes in early embryos of 3 echinoderm species (Patiria miniata, Lytechinus pictus and Patiriella regularis) and to lineage tracing experiments in the sea star Patiria miniata.
- Date: 2018 to 2022
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Collection
Data from: Machine learning for daily forecasts of Arctic sea-ice motion: an attribution assessment of model predictive skill
- MATLAB R2021b, Python and bash files used for data download and analysis. Processed data and MATLAB R2021b plotting files.
- Date: 1989 to 2021
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Collection
Data from: Measuring Estuarine Total Exchange Flow from Discrete Observations
- Matlab code for calculating Total Exchange Flow (TEF) using data from the three estuary models. Calculation scripts for five different methods as described in “Measuring Estuarine Total Exchange Flow from Discrete Observations” are included.
- Date: 2005 to 2012