Browse By Collection | Library Digital Collections

Collection

Data from: Observing Ocean-Atmosphere Fluxes From Autonomous Surface Vehicles

This collection contains raw and processed data collected from the Research platform FLIP and by two Wave Gliders during the ONR funded Langmuir Cell DRI experiment conducted in Spring 2017 off the coast of Southern California.
Date: 2017-03-21 to 2017-04-06

Collection

Data from: Flooding Projections due to Groundwater Emergence Caused by Sea Level Variability

Processed RBR solo pressure data, CTD density profiles, and atmospheric pressure-corrected GWT measurements from four groundwater monitoring wells in Imperial Beach, CA, (Dec 2021-May 2024) used to study sea level impact on flood risks.
Date: 2021-12-08 to 2024-05-14

Collection

Data from: Are AI weather models learning atmospheric physics? A sensitivity analysis of cyclone Xynthia

This collection contains the data for the manuscript titled "Are AI Weather Models Learning Atmospheric Physics? A Sensitivity Analysis of Cyclone Xynthia", which is necessary to reproduce the results presented.
Date: 2024

Collection

Fish Length-Weight Parameters

This collection contains fish length-weight data and parameters from various life history projects conducted by the Sandin Lab at Scripps Institution of Oceanography, UC San Diego.
Date: 2020 to present

Collection

A dataset of chronic nicotine-induced genes in HCC38 breast cancer cells

These data added value to our original research article by providing an unbiased view of the number and class of genes upregulated by nicotine in breast cancer cells.
Date: 2024

Collection

Chronobiologically-Informed Features from CGM Data Provide Unique Information for XGBoost Prediction of Longer-Term Glycemic Dysregulation in 8,000 Individuals with Type-2 Diabetes

This collection includes engineered features extracted from continuous glucose monitoring (CGM; Dexcom G6) in order to classify long-term glycemic dysregulation in a large, uncontrolled cohort over the course of a year. The goal of sharing these data are to encourage better algorithm development for predicting types of dysregulated days as well as within-individual dysregulation.
Date: 2022-04

Collection

Argo BathYmetry SenSing (ABYSS)

This collection contains locations, depths and times of ocean bathymetry detection using Deep Argo floats, along with estimated horizontal displacements.
Date: 2014 to present

Collection

Data from: Airborne remote sensing of concurrent submesoscale dynamics and phytoplankton

This archive contains the code and data needed to generate the figures in the publication: "Airborne remote sensing of concurrent submesoscale dynamics and phytoplankton" (Lang, Sarah E.; Omand, Melissa M.; Lenain, Luc). Data presented was collected as part of the Submesoscale Ocean Dynamics Experiment (S-MODE).
Date: 2021-10-29 to 2021-10-30

Collection

Data from: Inferring free surface disturbance properties from Kelvin wakes using convolutional neural network

Surface elevation data for training the convolutional neural networks.
Date: 2023

Collection

Eliminating In-Home Smoking project–urinary biomarker evidence of tobacco and cannabis smoke exposure of children

Real-time feedback alerts for elevated in-home air particle concentrations to reduce child secondhand smoke exposure, as measured by biomarkers of nicotine and THC.
Date: 2012 to 2015; 2019 to 2022

Collection

California Imaging FlowCytobot Network (CA IFCB Network)

The California Imaging Flowcytobot Network (CA IFCB Network) is a statewide network of automated in situ phytoplankton measurements to aid implementation of an automated early warning system for the detection of potential Harmful Algal Blooms (HABs).
Date: 2016 to 2024

Collection

Data from: Monitoring Subsurface Sediment for Assessing Seasonal Coastal Gravel Berm Behavior and Stability

This collection contains research dataset used to study seasonal changes in gravel berm topography and subsurface sediments in Torrey Pines State Beach and South Carlsbad State Beach in San Diego North County.
Date: 2023-03 to 2023-10

Collection

Supplemental large-area imaging data from: Groundtruthing assessments of lab-based coral thermal tolerance with large-area imaging

This collection includes the supplemental large-area imaging (LAI) data from a study conducted on three reefs in southern Taiwan with different thermal histories. The study compared in-situ LAI monitoring with ex-situ experiments with the goal of groundtruthing the experimental results.
Date: 2022-04-20 to 2022-09-23

Collection

Hornsund Fjord 2023: Broadband Active Acoustic and Oceanographic Data

This is a data set containing broadband active acoustic and oceanographic data collected in Hornsund Fjord, Svalbard.
Date: 2023-07-07 to 2023-07-12

Collection

Data from: A new method for diagnosing effective radiative forcing from aerosol-cloud interactions in climate models

This dataset includes a new method for estimating shortwave ERFaci from liquid clouds using cloud radiative kernels and MODIS joint histograms, offering insights into the Twomey effect, liquid water path, and cloud fraction adjustments.
Date: 2024

Collection

Faces of select bees from San Diego, CA

A collection of photographs featuring the faces of bees from San Diego, CA, showcasing the diversity of native bees inhabiting Southern California's bee biodiversity hotspot.
Date: 2011 to 2014

Collection

Data from: Subaerial Profiles at Two Beaches: Equilibrium and Machine Learning

This collection contains observations of beach elevation and model derived wave statistics from two locations in San Diego County: Torrey Pines State Beach and Black’s Beach (La Jolla, CA).
Date: 2015-01 to 2023-12

Collection

Green New Deal at UC San Diego

A collection of documents and other media recording the campaigns of the Green New Deal at UC San Diego, a grassroots climate justice organization that successfully lobbied the UC to transform its climate change policies.
Date: 2019 to 2024

Collection

Data from: Genuine Carbene Versus Carbene-Like Reactivity

Optimized geometries, frequencies, and single point calculations for reactants, products, reaction intermediates, and transition states involved in forming cyclic(aryl)(amino)carbene-metal complexes and decomposition products.
Date: 2023-04 to 2023-11

Collection

The Catalyst at UC San Diego

The Catalyst, founded summer of 2021, is an inclusive, open access paper series under the Undergraduate Research Hub at UCSD which aims to empower the voices of students who have a passion for conducting research.
Date: 2021 to present

Collection

California Proposition 56 Evaluation

This collection includes biennial and technical reports assessing changes in tobacco-related indicators for California’s populations pre-and post-Proposition 56.
Date: 2022-07-01 to present

Collection

Data from: Quantifying Bioluminescent Light Intensity in Breaking Waves using Numerical Simulations

This collection features velocity, volume fraction, and velocity gradient data interpolated onto a uniform Cartesian grid, along with Basilisk code for simulating breaking waves and Julia code for simulating bioluminescence.
Date: 2024

Collection

California American Indian Tobacco Initiative Evaluation (CAITIE)

This collection includes reports, dissemination materials, methodological materials, and data associated with the the California American Indian Tobacco Initiative Evaluation (CAITIE).
Date: 2019

Collection

Data from: Multiscale Modeling Shows How 2'-deoxy-ATP Rescues Ventricular Function in Heart Failure

Molecular dynamics simulations of myosin (1QVI) carried out with either ATP or dATP bound from the manuscript "Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure"
Date: 2020 to 2022

Collection

Data from: Prediction of Threonine-Tyrosine Kinase Receptor-Ligand Unbinding Kinetics with Multiscale Milestoning and Metadynamics

Heat shock protein 90 (HSP90) and threonine tyrosine kinase (TTK) simulation enabled estimation of kinetic rates (SEEKR) calculations using both steered molecular dynamics and metadynamics.
Date: 2022-05 to 2024-06

Collection

Measurements and Analysis Products from Baselining the Indirect Effect by Improving Quantification of Sea Spray and Marine Sources at Ascension Island during LASIC

This collection provides data and codes used to retrieve aerosol mode fitting parameters, Hoppel minimum diameters from measured particle size distributions, cloud supersaturations, and cloud microphysical properties during the ARM LASIC campaign.
Date: 2020 to 2024

Collection

Data from: Observations and Numerical Simulations of the Onset and Growth of Langmuir Circulations

This collection contains data from observations and numerical simulations of Langmuir circulations, along with the relevant routines to generate figures in Andriatis et al. 2024.
Date: 2020-11-04 to 2020-11-25

Collection

Data from: Characterizing Non-phase-locked Tidal Currents in the California Current System using High-frequency Radar

Processed time series from HFR, power spectra from HFR, and fitted harmonic constituents from analyzed HFR. Data from a bottom pressure sensor used in suppl. Scripts used in the study to analyze and process data and to make visualizations.
Date: 2012-01-01 to 2021-04-01

Collection

Data from: NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation

This collection contains trajectory and molecular dynamics simulation output data for NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation.
Date: 2022-01-01 to 2024-04-01

Collection

San Diego County GIS Data

This collection contains GIS or geospatial data for San Diego County. Datasets were originaly acquired from the SanGIS and SANDAG Regional Data Warehouse and the San Diego Open Data Portal.
Date: 1986 to present

Collection

Genotype data from Crl:CFW(SW)-US_P08 stock of outbred mice

Genotype data for CFW mice for the GWAS for age-related hearing loss.
Date: 2021 to present

Collection

Data from: Sensitivities of the West Greenland Current to Greenland Ice Sheet Meltwater in a Mesoscale Ocean/Sea Ice Model

Diagnostics from a high-resolution global coupled ocean/sea-ice (POP/CICE5) simulations. Diagnostics are calculated based on 1992-1993 for three meltwater forcing experiments: a control run, surface forcing, and spread forcing.
Date: Model creation: 2016 to 2023. Model representation: 1992 to 1993

Collection

Educational Dataset Service Collection: Machine-learning suitable datasets curated for use in instruction

Curated datasets appropriate for use in machine learning in instruction and research, including real research datasets, sanitized and synthetic administrative data from campus sources, and datasets commonly used for training in specific disciplines.
Date: 2024 to present

Collection

Data from: Diminished efficacy of regional marine cloud brightening in a warmer world

Marine cloud brightening simulation output generated using the Community Earth System Model (CESM) version 2.2 described in Wan et al. (accepted).
Date: 2022-04 to 2023-12

Collection

Data from: Toward Enhanced Reusability: A Comparative Analysis of Metadata for Machine Learning Objects and Their Characteristics in Generalist and Specialist Repositories

This dataset contains data reported in the paper, Labou et al. 2023, which aims to understand how researchers are currently documenting machine learning (ML) research outputs for sharing, and the extent to which repository metadata fields enable reuse of ML objects.
Date: 2021 to 2023

Collection

Aerosol Measurements at Utqiagvik, Alaska, from 2022 to 2027 for Sustaining The Utqiagvik Aerosol Record of Decades (STUARD)

This collection contains submicron aerosol particle number size distributions, CCN spectra, submicron aerosol inorganic ions and organic components, and oxygen isotopes measured at Utqiagvik from June 2022-2027.
Date: 2022 to 2026

Collection

Data and Code from: Retaining Short-Term Variability Reduces Mean State Biases in Wind Stress Overriding Simulations

Fortran source code developed to override wind stress with a climatology in the Community Earth System Model (CESM) v. 1.2 and resulting GCM output data from Luongo et al. (2024).
Date: 2022 to 2023

Collection

Refugee Data and Gender

Review of datasets on refugees.
Date: 2019 to 2021

Collection

Data from: Impacts of Dropsonde Observations on Forecasts of Atmospheric Rivers and Associated Precipitation in the NCEP GFS and ECMWF IFS models

ECMWF and NCEP IVT and precipitation data from control forecasts and data denial forecasts (without dropsondes assimilated) for Atmospheric River Reconnaissance (AR recon) 2019 and 2020.
Date: 2019-02-01 to 2019-03-01 and 2020-01-24 to 2020-03-16

Collection

BindingDB: Measured Binding Data for Protein-Ligand and Other Molecular Systems

This collection contains the full BindingDB dataset of experimental protein-ligand and host-guest binding data.
Date: 2000 to present

Collection

Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
Date: 2015-01 to 2015-03

Collection

CCHDO Hydrographic Data Archive

The CCHDO Hydrographic Data Collection contains high quality, global, vessel-based CTD and Niskin bottle data from GO-SHIP, WOCE, CLIVAR and other repeat hydrography programs past and present.
Date: 1972 to present

Collection

Standard Operating Procedure Documents for Coral Reef Ecological Monitoring

This collection contains documents describing methods used by the Sandin Lab to collect standardized coral reef community ecology data.
Date: 2010 to Present

Collection

100 Island Challenge Collection

The 100 Island Challenge is a collaborative effort to describe the variation of coral reefs from across the globe. We combine classical field surveys with innovative imaging and data technologies to archive reefs digitally and watch how populations change through time.
Date: 2012 to present

Collection

Center for Environmental Imaging Collection

The Center for Environmental Imaging (CEI) is an effort to digitally archive imagery of the natural world. This collection includes image datasets from a diversity of projects and environmental habitats.
Date: 2012 to present

Collection

Data from: Readily Available Primary Aminoboranes as Powerful Reagents for Aldimine Synthesis

Date: 2017 to 2018

Collection

Data from: Ocean Surface Salinity Response to Atmospheric River Precipitation in the California Current System

Oceanic and atmospheric measurements, reanalysis and modeled outputs in the California Current System.
Date: 1992 to 2019

Collection

Data from: Unexpected failure of regional marine cloud brightening in a warmer world

Marine cloud brightening simulation output generated using the Community Earth System Model (CESM) version 2.2 described in Wan et al., (submitted).
Date: 2022-04 to 2023-04

Collection

Data from: QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations

The data set contains the files necessary to recalculate/reproduce the unbinding rates of ligands for the model host-guest systems and Hsp90-inhibitor complexes in the paper "QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations."
Date: 2021 to 2023

Collection

Data from: Commitment Problems or Bidding Wars? Rebel Fragmentation as Peace Building

This project uses an original dataset of field commanders in post-civil war Tajikistan to show that warlords from the victorious faction were as likely to be purged from the ruling coalition in a given year as warlords from the defeated faction.
Date: 2012

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