Browse By Collection | Library Digital Collections

Collection

100 Island Challenge Collection

The 100 Island Challenge is a collaborative effort to describe the variation of coral reefs from across the globe. We combine classical field surveys with innovative imaging and data technologies to archive reefs digitally and watch how populations change through time.
Date: 2012 to present

Collection

A dataset of chromosomal instability gene signature scores in normal and cancer cells from the human breast

These data show the relative amount of chromosomal instability (CIN) in a diverse array of human breast cell types, including non-transformed mammary epithelial cells as well as cancer cell lines. Additional data is also provided from human embryonic and mesenchymal stem cells.
Date: 2018 to 2023

Collection

Abraham A. Palmer Lab Research Data Collection

We are studying the relationship between genotype and phenotype, especially behavioral phenotypes. Palmer Lab members collaborate on federally-funded projects that use a variety of species including humans, rats, mice, and zebrafish. A major focus of this work has been on developing and refining methods for genome-wide association studies (GWAS) in model organisms and integrating these results with expression QTLs (eQTL) and other -omics to identify specific and testable hypotheses about the relationship between genes and behavior.
Date: 2006 to present

Collection

Aerosol and Cloud Observations in La Jolla, CA, in May-June 2011 during SOLEDAD (Stratocumulus Observations of Los-Angeles Emissions Derived Aerosol-Droplets)

Measurements of polluted marine aerosol and cloud droplet chemical and physical properties at Mt. Soledad and Scripps Pier in La Jolla, California.
Date: 2012-05-01 to 2012-06-18

Collection

Aerosol Composition and Size Measurements at Fresno and Fontana

Non-refractory aerosol particle and refractory black carbon mass concentrations, size distributions, and coatings along with single particle compositions and organic aerosol functional groups in Fresno and Fontana.
Date: 2014-12-19 to 2015-01-13 (Fresno); 2015-07-04 to 2015-07-28 (Fontana)

Collection

Aerosol Measurements at Utqiagvik, Alaska, from 2022 to 2027 for Sustaining The Utqiagvik Aerosol Record of Decades (STUARD)

This collection contains submicron aerosol particle number size distributions, CCN spectra, submicron aerosol inorganic ions and organic components, and oxygen isotopes measured at Utqiagvik from June 2022-2027.
Date: 2022 to 2026

Collection

Aerosol Microphysics and Chemical Measurements at Mt. Soledad and Scripps Pier during the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) from February 2023 to February 2024

Aerosol Microphysics and Chemical Measurements at Mt. Soledad and Scripps Pier during the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) from February 2023 to February 2024.
Date: 2023-02-15 to 2024-02-14

Collection

Aerosol Particle Chemical and Physical Measurements on the 2015, 2016, 2017, and 2018 North Atlantic Aerosols and Marine Ecosystems Study (NAAMES) Research Cruises

Size distributions, organic functional groups, and non-refractory and single particle composition of North Atlantic marine aerosol particles
Date: 2015-11-06 to 2015-11-30; 2016-05-11 to 2016-06-05; 2017-08-30 to 2017-09-24; 2018-03-20 to 2018-04-13

Collection

Ambient and Sea Sweep Generated Aerosol Measurements in the North Atlantic in May-June 2014 during WACS2 (Western Atlantic Climate Study 2)

Measurements of ambient and seawater generated marine aerosol particle chemical and physical properties in the North Atlantic in May-June 2014.
Date: 2014-05-20 to 2014-06-05

Collection

An annotated checklist of the bees (Hymenoptera: Anthophila) of San Diego County, California

This database represents an ongoing survey to document all the bee species that occur within the bounds of San Diego County. As this project is still ongoing, the database will be updated periodically with additions and/or corrections.
Date: July 2015 to August 2020

Collection

Art of Science

UC San Diego Library Art of Science contest submissions.
Date: 2021-02 to present

Collection

Atmospheric Aerosol Submicron Particle Composition including Organic Functional Group Concentrations at Arctic Locations

This collection includes separate data sets of atmospheric aerosol submicron particle composition that include organic functional group concentrations at locations within the Arctic.
Date: 2008 to 2014

Collection

Atmospheric and oceanographic measurements from a Wave Glider autonomous surface vehicle collected off the coast of Southern California from May 2020 to December 2021

This collection contains meteorology, wave, and current data from Wave Glider Autonomous Surface Vehicles (ASVs) gathered in a series of field deployments conducted off the coast of Southern California from May 2020 to December 2021. Our approach involved operations in close proximity to fixed National Data Buoy Center (NDBC), Coastal Data Information Program (CDIP), and Scripps Institution of Oceanography (SIO) moored buoy assets, which provided ground-truth data to characterize the quality of the Wave Glider measurements.
Date: 2020-05 to 2021-12

Collection

Autonomous Underwater Vehicle (AUV)-borne velocity measurements collected over a fringing coral reef near Makua Beach, Oahu, Hawai'i

This collection contains raw data from a REMUS-100 Autonomous Underwater Vehicle (AUV) deployed in September 2013 over a fringing coral reef near Makua Beach, Oahu, Hawai'i.
Date: 2013-09-06 to 2013-09-08

Collection

Bee Research Methods: Video Demonstrations

This collection shows bee behaviors and methods used to study bee behaviors.
Date: 2005 to 2014

Collection

BindingDB: Measured Binding Data for Protein-Ligand and Other Molecular Systems

This collection contains the full BindingDB dataset of experimental protein-ligand and host-guest binding data.
Date: 2000 to present

Collection

California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic and Trawl Data

This is a voluminous data set containing acoustic and trawl data collected on CalCOFI (California Cooperative Oceanic Fisheries Investigations) cruises.
Date: 2009 to 2015

Collection

California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic Fisheries Data (2017- )

Non-calibrated multi-frequency acoustic fisheries data (.raw files) collected aboard RV Sally Ride on the November 2017 CalCOFI (California Cooperative Fisheries Investigations) cruise
Date: 2017-11-09 to 2017-11-24

Collection

California Local Tax Ballot Measures

Public records associated with most of the local tax measures put before California voters since 1986, including excerpts from official voter information guides and sample ballots, and proposed ordinance text, where available.
Date: 2014 to 2020

Collection

California Smokers Cohort (CSC)

The objective of this survey was to collect statewide data on tobacco-related behaviors, knowledge of and attitudes towards smoking, and monitoring the effect of State-initiated programs on individual target populations.
Date: 2011 to 2012

Collection

California Tobacco Survey (CTS)

The objective of these surveys is to collect representative statewide data on cigarette smoking behavior, attitudes towards smoking, media exposure to smoking, and use of tobacco products other than cigarettes, from populations living in California.
Date: 1990 to 2011

Collection

Carbonaceous Aerosol Particle Measurements from Cal-Mex 2010 in Tijuana, Mexico

Single Particle Soot Photometer (SP2) measurements of aerosol refractory black carbon (BC) content for individual particles and Fourier Transform Infrared (FTIR) spectroscopic analysis of organic functional groups of submicron particles at Parque Morelos during Cal-Mex 2010 from 15 May to 30 June.
Date: 2010-05-15 to 2010-06-30

Collection

Carbonaceous Aerosol Particle Measurements from Southeast Atmosphere Study (SOAS) 2013 in Look Rock, Tennessee, USA

HR-Tof-AMS submicon mass spectra for ensemable mass and single paritcles (by LS), Fourier Transform Infrared (FTIR) spectroscopic analysis of organic functional groups of submicron particles,and size distributions at Look Rock during SOAS 2013.
Date: 2013-06-01 to 2013-07-18

Collection

CAVEcam Virtual Reality Photography Collection

Full-surround 3-D images make up this collection of original and rendered composite images called CAVEcams which are very high-resolution images for both left and right eye, normally viewed in virtual reality systems, either CAVEs or HMDs.
Date: 2009 to 2016

Collection

CCHDO Hydrographic Data Archive

The CCHDO Hydrographic Data Collection contains high quality, global, vessel-based CTD and Niskin bottle data from GO-SHIP, WOCE, CLIVAR and other repeat hydrography programs past and present.
Date: 1972 to present

Collection

Cell Centered Database

A collection of high resolution 2D, 3D and 4D data from light and electron microscopy of tissues from the nervous system and other systems.
Date: 1986 to 2012

Collection

Cell Image Library

This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. The purpose of this database is to advance research on cellular activity, with the ultimate goal of improving human health.
Date: 2010-08-09 to present

Collection

Center for Aerosol Impacts on Chemistry of the Environment (CAICE)

A wide array of chemical, physical, and computational measurements, models, and data sets for laboratory-generated sea spray aerosols and model systems. Each item in the collection is associated with a published peer-reviewed manuscript.
Date: 2010 to present

Collection

Center for Environmental Imaging Collection

The Center for Environmental Imaging (CEI) is an effort to digitally archive imagery of the natural world. This collection includes image datasets from a diversity of projects and environmental habitats.
Date: 2012 to present

Collection

Center for Western Weather and Water Extremes (CW3E) Surface Meteorological Observational Dataset

CW3E Surface Meteorological Observational Dataset: temperature, relative humidity, pressure, precipitation, and soil moisture and temperature at six levels collected every 2 minutes, from 11 stations in the Russian, Yuba, Feather, and Prado watersheds.
Date: 2017 to present

Collection

CLIvar and MOde water Dynamics Experiment (CLIMODE) and Antarctic Intermediate Water (AAIW) Float Data Archive

Calibrated and uncalibrated data from 12 Argo-equivalent, Webb Research ApexSBE profiling floats in the North Atlantic's Eighteen Degree Water region (CLIMODE), and southeast Pacific’s Subantarctic Mode Water region. Sensors: pressure, temperature, salinity, and Aanderaa optode oxygen.
Date: 2005-11-10 to 2008-05-21

Collection

Daily POP Model Output over the Equatorial Indian Ocean

Daily POP Model output (2005-2009) extracted over the equatorial Indian Ocean.
Date: 2005 to 2009

Collection

Data and Code from: 3D Reconstruction and Segmentation of Barely Visible Impact Damage in Composites from Pulse-Echo Ultrasonic C-Scans

26 processed pulse-echo ultrasonic C-scans of composites with barely visible impact damage with varying layups and impact energies, with calculated time-of-flight, contours of damaged regions, damage depth map, and 3D reconstruction of the damage state.
Date: 2022 to 2023

Collection

Data and Code from: Buoyancy Forcing Dominates the Cross-Equatorial Ocean Heat Transport Response to Northern Hemisphere Extratropical Cooling

Fortran source code to developed to override wind stress in the Community Earth System Model (CESM) v. 1.2 and resulting GCM output data from Luongo et al. (2022).
Date: 2021-05 to 2021-10

Collection

Data and Code from: Measuring Turbulent Dissipation with Acoustic Doppler Velocimeters in the Presence of Large, Intermittent, Infragravity Frequency Bores

Velocity data from Los Peñasquitos Lagoon and processing code to help researchers reproduce ADV de-spiking and turbulent spectrum calculation methods that work in the presence of non-linear, intermittent dynamics as well as a generally applicable, robust inertial sub-range fitting method.
Date: 2020-02-02 to 2020-02-14

Collection

Data and Code from: Retaining Short-Term Variability Reduces Mean State Biases in Wind Stress Overriding Simulations

Fortran source code developed to override wind stress with a climatology in the Community Earth System Model (CESM) v. 1.2 and resulting GCM output data from Luongo et al. (2024).
Date: 2022 to 2023

Collection

Data from: A Broadband View of the Sea Surface Height Wavenumber Spectrum

This collection has SSH observations from airborne lidar used in the analysis presented in Villas Bôas et al. (2022)
Date: 2019-03-28 to 2019-04-10

Collection

Data from: A climate vulnerability assessment of cultural heritage in the La Fortaleza and San Juan National Historic Site World Heritage Site

Inundation threats related to climate change in San Juan Bay, Puerto Rico, which includes the World Heritage Site of La Fortaleza and San Juan National Historic Site. The map contains separate layers for sea level rise from NOAA's Sea Level Rise Viewer Tool, and layers for other relevant variables produced by the Coastal Resilience Evaluation and Siting Tool (CREST), acquired in Spring 2023.
Date: 2023-04-03 to 2023-06-09

Collection

Data from: A Climatic Sand Management Model for Cardiff State Beach, CA

Annual mean beach width and nearshore sand volume survey estimates for 2000-2019 at South Torrey Pines and Cardiff State Beach, CA, and associated sediment budget modeling code for Cardiff State Beach.
Date: 2000 to 2021

Collection

Data from: A Glimpse through Time and Space: Visualizing Spatial Continuity and History-making at Çatalhöyük, Turkey

This collection includes 3-D models, derived 3-D renders, Unity 3D asset packages, a Win64 3-D app, and related metadata that reconstruct both spatially and temporally (4-D) the ‘Shrine’ 10 sequence at the Neolithic site of Çatalhöyük, Turkey
Date: 2017 to 2019

Collection

Data from: A Living Vector Field Reveals Constraints on Galactose Network Induction in Yeast

To study how cellular traits produce population phenotypes, we built living vector fields from single-cell timecourses of the proteins Gal3p and Gal1p as yeast switched to galactose from other nutrients. This collection has data and analysis codes.
Date: 2015 to 2016

Collection

Data from: Absolute Templating of M(111) Cluster Surrogates by Galvanic Exchange

Density Functional Theory Methods were used to calculate several carbene coinage metal clusters and their intermediates in a galvanic exchange process. Also, these methods calculated NICS scan, and WFN method for ELF.
Date: 2019 to 2020

Collection

Data from: Aerosol-Limited Effects on Cloud Condensation Nuclei in Clean Conditions in the Tropical South Atlantic Boundary Layer during LASIC

This collection provides data and codes used to retrieve aerosol mode fitting parameters and Hoppel minimum diameters from measured particle size distributions during the ARM LASIC campaign.
Date: 2022 to 2023

Collection

Data from: Airborne observations of shoaling and breaking internal waves

This collection contains data presented in: "Airborne observations of shoaling and breaking internal waves." This includes a mosaic of sea surface temperature, spectral analysis of temperature structures, surface velocities, and areas undergoing breaking.
Date: 2015-08-01

Collection

Data from: Airborne observations of surface winds, waves and currents from meso to submesoscales

Coincident and collocated high-resolution observations of surface currents and directional properties of surface waves collected from an airborne instrument, the Modular Aerial Sensing System (MASS), collected off the coast of Southern California.
Date: 2021-05-18 through 2021-11-05

Collection

Data from: Allostery through the Computational Microscope: cAMP Activation of a Canonical Signalling Domain

This collection contains the molecular dynamics trajectories scripts and models used in the paper “Allostery through the computational microscope: cAMP activation of a canonical signalling domain”.
Date: 2014-08-24

Collection

Data from: Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model

This data collection represents all UH8to2 model data used for the publication "Arctic ice-ocean interactions in an 8-to-2 kilometer resolution global model". This includes ocean and sea ice characteristics from the 2017-2020 UH8to2 model run.
Date: Model representation: 2017 to 2020

Collection

Data from: Autumn precipitation: the competition with Santa Ana winds in determining fire outcomes in southern California

This dataset includes two versions of the Santa Ana Wind Regional Index (SAWRI) and Livneh precipitation data from 1948-2018.
Date: Compiled: 1948 to 2018

Collection

Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization

This collection integrates highly accurate 3D snapshots of Bodie's historic buildings before/after disturbance, or post-restoration, and other 3D geospatial data that were used to monitor and digitally preserve important cultural resources at Bodie California State Historic Park.
Date: 2015 and 2020

Collection

Data from: Calibrated absolute seafloor pressure measurements for geodesy in Cascadia

Raw and corrected pressure data from campaign-style surveys of absolute calibrated sea pressure using an Absolute Self-Calibrating Pressure Recorder (ASCPR) in the Cascadia subduction zone from 2014 to 2017.
Date: 2014 to 2017

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