Transition Data for charged toy system See milestones.xml and milestones_brute.xml for additional information Indeces: 1_0: site 1, radius 6.0 1_1: site 1, radius 7.0 1_2: site 1, radius 8.0 1_3: site 1, radius 9.0 1_4: site 1, radius 10.0 1_5: site 1, radius 11.0 Milestoning: transition counts: 'site_source' : {'site_destination1': count, 'site_destination2': count, ...} '1_1': {'1_0': 205, '1_2': 276}, '1_2': {'1_1': 368, '1_3': 355}, '1_3': {'1_2': 308, '1_4': 405}, '1_4': {'1_3': 224, '1_5': 292}} incubation time avg.: 'site_source': incubation time (in fs) '1_1': 2538.8773388773388, '1_2': 2222.9737206085756, '1_3': 2215.2524544179523, '1_4': 2249.0891472868216 Brute-Force: transition counts: '1_1': {'1_0': 109, '1_2': 700} incubation time average (in fs): '1_1': 8252.6081582200241 Note: for the brute force calculations, milestone 0 is located 6 angstroms from the spherical receptor center, while milestone 1 is 10 angstroms, and milestone 2 is 11 angstroms from the receptor center.