{"CIL_CCDB":{"Status":{"Is_public":true,"Deleted":false,"Publish_time":1314763200},"Data_type":{"Still_image":false,"Z_stack":true,"Video":false,"Time_series":false},"CIL":{"Image_files":[{"File_type":"OME_tif","File_path":"37040.tif","Size":25300000,"Mime_type":"image\/tif"},{"File_type":"Jpeg","File_path":"37040.jpg","Size":34849,"Mime_type":"image\/jpeg; charset=utf-8"},{"File_type":"Zip","File_path":"37040.zip","Size":25304914,"Mime_type":"application\/zip"}],"CORE":{"ATTRIBUTION":{"Contributors":["Jennifer Bestman","Holly Cline"]},"BIOLOGICALPROCESS":[{"onto_name":"neuron development","onto_id":"GO:0048666"},{"onto_name":"morphogenesis of a branching structure","onto_id":"GO:0001763"}],"PROCESSINGHISTORY":{"onto_name":"unprocessed raw data","onto_id":"FBbi:00000582"},"PARAMETERIMAGED":{"onto_name":"fluorescence emission","onto_id":"FBbi:00000316"},"IMAGEDESCRIPTION":{"free_text":"This is IMAGE #1 (0 hour) of a time lapse series contained with in this image group. It shows neurons from the optic tectum of an albino Xenopus laevis tadpole CNS, stage 47.\nThe pigment cells in the skin have high autofluorescence and are visible in the superficial layers of the z-stack.\n\nThe images were acquired at 4 hour intervals over 8 hours, and show morphological plasticity of the dendritic arbor with branch additions and retractions.\n\nThese cells were transfected with in vivo electroporation of plasmid DNA encoding eGFP ~24 hours before the first image was acquired. The intact, living tadpole was anesthetized, positioned under a glass coverslip and this image was taken directly through its transparent skin using a custom built two-photon microscope."},"ITEMTYPE":{"onto_name":"recorded image","onto_id":"FBbi:00000265"},"CELLULARCOMPONENT":[{"onto_name":"dendrite","onto_id":"GO:0030425"},{"onto_name":"neuronal cell body","onto_id":"GO:0043025"},{"onto_name":"cytoplasm","onto_id":"GO:0005737"},{"onto_name":"axon","onto_id":"GO:0030424"}],"RELATIONTOINTACTCELL":{"onto_name":"whole mounted tissue","onto_id":"FBbi:00000024"},"SOURCEOFCONTRAST":{"onto_name":"distribution of a specific protein","onto_id":"FBbi:00000597"},"GROUP_ID":"9256","TECHNICALDETAILS":{"free_text":"Specifications of the custom built two-photon microscope, including the laser sources, signal amplification, PMT specifications, and YFP filter sets are described in: \nRuthazer ES, Li J, Cline HT. 2006. Stabilization of axon branch dynamics by synaptic maturation. J Neurosci 26(13):3594-3603. \n\nThe methods of cell transfection with electroporation can be found here: \nBestman JE, Ewald RC, Chiu S-L, Cline HT. 2006. In vivo single-cell electroporation for transfer of DNA and macromolecules. Nat Protocols 1(3):1267-1272. \n\nFurther explanation can be found here:\nBestman JE, Cline HT. 2008. The RNA binding protein CPEB regulates dendrite morphogenesis and neuronal circuit assembly in vivo. Proc Natl Acad Sci U S A 105(51):20494-20499.\n\nBestman JE, Cline HT. 2009. The Relationship between Dendritic Branch Dynamics and CPEB-Labeled RNP Granules Captured in Vivo. Front Neural Circuits 3:10."},"DATAQUALIFICATION":{"free_text":"RAW;spatialmeasurements;intensitiesquantitation"},"TERMSANDCONDITIONS":{"free_text":"public_domain"},"IMAGINGMODE":{"onto_name":"multi-photon microscopy","onto_id":"FBbi:00000255"},"DIMENSION":[{"Space":{"Image_size":512,"Pixel_size":{"unit":"microns","value":0.233},"axis":"X"}},{"Space":{"Image_size":512,"Pixel_size":{"unit":"microns","value":0.233},"axis":"Y"}},{"Space":{"Image_size":48,"Pixel_size":{"unit":"microns","value":1.5},"axis":"Z"}}],"NCBIORGANISMALCLASSIFICATION":{"onto_name":"Xenopus laevis","onto_id":"NCBITaxon:8355"},"PREPARATION":{"onto_name":"living tissue","onto_id":"FBbi:00000025"},"VISUALIZATIONMETHODS":{"onto_name":"EGFP","onto_id":"FBbi:00000082"},"CELLTYPE":{"onto_name":"CNS neuron (sensu Vertebrata)","onto_id":"CL:0000117"}}},"Citation":{"Title":"Jennifer Bestman, Holly Cline (2011) CIL:37040, Xenopus laevis, CNS neuron (sensu Vertebrata). CIL. Dataset","ARK":"ark:\/b7295\/w9cil37040","DOI":"doi:10.7295\/W9CIL37040"}}}