Browse By Collection

Collection

Data from: Effect of atmospheric forcing resolution on simulated mixed layer depth in the North Pacific

This dataset contains daily output from two eddying ocean simulations in the North Pacific. The two experiments have the same configuration except for the atmospheric forcing resolution.
Date: 2014 to 2018

Collection

Data from: Electrostatic interactions as mediators in the allosteric activation of PKA RIalpha

Molecular dynamics input files, trajectories and analysis scripts used in the paper "Electrostatic interactions as mediators in the allosteric network of PKA RIalpha".
Date: 2015-09-15

Collection

Data from: Enhanced surf zone and wave runup observations with hovering drone-mounted LiDAR

Drone LiDAR data obtained during the SCaRP field experiment of Winter 2019-2020 at Torrey Pines State Beach in San Diego, California, USA.
Date: 2019-12-14 to 2020-02-24

Collection

Data from: Episodic Southern Ocean heat loss and its mixed layer impacts revealed by the furthest south multi-year surface flux mooring

This dataset contains Quality Controlled daily mean air-sea heat flux estimates from the NSF Ocean Observatories Initiative Southern Ocean mooring site for the period 2015 to 2017, as used in the analysis of Ogle et al. 2018 (doi:10.1029/2017GL076909)
Date: 2015 to 2017

Collection

Data from: Exploration and Explanation in Computational Notebooks

Analysis of approximately 1.25 million Jupyter Notebooks downloaded from public repositories on GitHub in July 2017.
Date: July 2017

Collection

Data from: Feasibility of continuous fever monitoring using wearable devices

Sixty-five continuous days of data at one-minute resolution covering fifty individuals reporting COVID-19 infections starting on day 45 in the data set.
Date: 2020-03 to 2020-06

Collection

Data from: Four Atmospheric Circulation Regimes Over the North Pacific and Their Relationship to California Precipitation on Daily to Seasonal Timescales

This dataset contains four indices of daily atmospheric variability associated with four circulation regimes over the North Pacific, which have been identified as essential drivers of atmospheric river landfall variability and California precipitation.
Date: 2018

Collection

Data from: Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package

Data, functions, and scripts associated with "Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package" (Kachelein et al. 2022).
Date: 2010 to 2021

Collection

Data from: Ice break-up controls dissipation of wind-waves across Southern Ocean sea ice

In situ wave observations and WaveWatch III model output for Ardhuin et al. (2020).
Date: 2018-05 to 2018-07

Collection

Data from: Identification of weakly- to strongly-turbulent three-wave processes in a micro-scale system

Height of water surface at center of 40uL sessile drop at 115,200fps for ~1s during actuation by ~7MHz thickness mode ultrasound. Each data set was taken at the indicated ultrasound input power level (from 0-350 mW).
Date: 2021-11-28 to 2022-01-18

Collection

Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App

The purpose of this collection is to curate online all the 3D models and related metadata representing the three-dimensional stratigraphy of Çatalhöyük Building 89 as they are disseminated through the open source virtual reality application Dig@IT.
Date: 2011 to 2015

Collection

Data from: Impact of Atmospheric River Reconnaissance Dropsonde Data on the Assimilation of Satellite Data in GFS

This collection are the satellite radiance data from the data denial experiments for the 2020 atmospheric river reconnaissance. The data are generated by the NCEP GDAS system during January 24 – March 18, 2020, corresponding to analyses in Zheng et al. 2022.
Date: 2020-01-24 to 2020-03-18

Collection

Data from: Impacts of Dropsonde Observations on Forecasts of Atmospheric Rivers and Associated Precipitation in the NCEP GFS and ECMWF IFS models

ECMWF and NCEP IVT and precipitation data from control forecasts and data denial forecasts (without dropsondes assimilated) for Atmospheric River Reconnaissance (AR recon) 2019 and 2020.
Date: 2019-02-01 to 2019-03-01 and 2020-01-24 to 2020-03-16

Collection

Data from: Implications of Byproduct Chemistry in Nanoparticle Synthesis

Absorption spectra of organic byproducts of tetrachloroaurate reduction by 2-(N-morpholino)ethanesulfonate (MES) were calculated via time-dependent density functional theory. These include small organic molecules, organic MES oligomers, and Au(I) complexes.
Date: 2016 to 2018

Collection

Data from: Improved Forecast Skill through the Assimilation of Dropsonde Observations from the Atmospheric River Reconnaissance Program

This dataset are initial and boundary conditions generated by West-WRF implemented at Scripps Institution of Oceanography of UC San Diego for the Atmospheric River Reconnaissance dropsonde data denial experiments described in Zheng et al. 2021 (JGR). With this dataset, one should be able to repeat the WRF simulations for the NoDROP and WithDROP experiments using WRF V3.9.1.1.
Date: 2016-02-14 to 2019-03-01

Collection

Data from: Increasing STEM Undergraduate Participation in Innovative Activities: Field Experimental Evidence

Measures of performance on an innovation contest by whether or not participants receive randomized encouragement, and whether participants self-selected into the contest or joined after receiving a monetary inducement for doing so.
Date: 2017-01 to 2017-07

Collection

Data from: Influence of Carbene and Phosphine Ligands on the Catalytic Activity of Gold Complexes in the Hydroamination and Hydrohydrazination of Alkynes

Several carbene structures and reaction intermediates for the Au catalyzed hydroamination of alkynes were calculated with Density Functional Theory Methods.
Date: 2019 to 2020

Collection

Data from: Instrumented Wave Gliders for Air-Sea Interaction and Upper Ocean Research

This collection regroups data sets collected during four major field programs from 2013 to 2020 from a fleet of Wave Gliders specifically designed and instrumented for air-sea interaction and upper ocean observations by the Air-Sea Interaction Laboratory at Scripps Institution of Oceanography.
Date: 2013 to 2020

Collection

Data from: Interannual variations in meltwater input to the Southern Ocean from Antarctic ice shelves

Height changes and basal melt rates of Antarctic ice shelves from satellite remote sensing, 1994–2018.
Date: 1994 to 2018

Collection

Data from: Internal tide structure and temporal variability on the reflective continental slope of southeastern Tasmania

This collection contains in situ data (from 3 moorings and 1 CTD/LADCP station) from the Tasman Tidal Dissipation Experiment (T-TIDE) that was analyzed in Marques et al. (2020).
Date: From 2015-01 to 2015-03

Collection

Data from: Is the Mediterranean the New Rio Grande? U.S. and E.U. Immigration Pressures in the Long Run

This project uses a gravity-style model to project bilateral migration flows for the next 40 years. It shows that Europe—unlike the US—will face substantial, demographically driven migration pressures from across the Mediterranean for decades to come.
Date: 2016-01-01 to 2016-05-31

Collection

Data from: Latent profile analysis of objectively measured sleep, physical activity, and sedentary time and associations with health in adult women

This dataset represents the analysis variables for a group of 372 women collected at 4 different sites across the United States, including sleep quality, physical activity and sedentary behaviors.
Date: 2012-10-10 to 2014-01-13

Collection

Data from: Lineage tracing shows that cell size asymmetries predict the dorsoventral axis in the sea star embryo

Microscopy data relative to measurements of cell sizes in early embryos of 3 echinoderm species (Patiria miniata, Lytechinus pictus and Patiriella regularis) and to lineage tracing experiments in the sea star Patiria miniata.
Date: 2018 to 2022

Collection

Data from: Machine learning for daily forecasts of Arctic sea-ice motion: an attribution assessment of model predictive skill

MATLAB R2021b, Python and bash files used for data download and analysis. Processed data and MATLAB R2021b plotting files.
Date: 1989 to 2021

Collection

Data from: Measuring Seafloor Strain with an Optical Fiber Interferometer

A 95.5 day long record of earth strain collected on the seafloor 95 km offshore Oregon was collected (ocean depth was 1910 m). The instrument used was a 200-m-long optical fiber cable, stretched between two anchors in an east-west line.
Date: 2015-10-24 to 2016-01-27

Collection

Data from: Mechanisms of heat flux across the Southern Greenland continental shelf in 1/10° and 1/12° ocean/sea ice simulations

Volume and heat fluxes across the Greenland continental shelf in two eddy-active coupled ocean/sea-ice simulations.
Date: 2005 to 2009

Collection

Data from: Mesopelagic fishes dominate otolith record of past two millennia in the Santa Barbara Basin

Two data files for Santa Barbara Basin, (1) individual fossil otolith data (geometric measurements, shape characteristics and elemental composition); (2) time series of otolith deposition rate and climate proxies.
Date: 1993 to 2015

Collection

Data from: Metabolic rates in the Agua Hedionda Lagoon during the 2020 Southern California red tide event

A time series from autonomous SeapHOx sensors (pH, dissolved oxygen (DO), salinity, temperature, and pressure) in the Agua Hedionda Lagoon, captured baseline conditions in 2018 and the effects of a massive red tide occurring along the Southern & Baja California coast during the spring of 2020.
Date: 2018-11-02 to 2018-12-24 and 2020-02-05 to 2020-06-14

Collection

Data from: Multi-Source Feature Fusion for Object Detection Association in Connected Vehicle Environments

This dataset contains labeled virtual and real-world examples of object detection association in a connected vehicle environment.
Date: 2020 to 2022

Collection

Data from: Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning

The kinetic rate constants of four biochemically relevant ligand-receptor systems were estimated and described in a publication. This collection includes input files, output files, trajectories, and statistics associated with the study.
Date: 2013 to 2015

Collection

Data from: Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase

The input and output Brownian dynamics trajectories associated with this study.
Date: 2017 to 2020

Collection

Data from: Near-Inertial Surface Currents Around Islands

This collection contains numerical model output from a linear 1.5-layer reduced gravity model. These simulations are presented in Siegelman et al. (2022), which examines the behavior of near-inertial surface currents around circular islands.
Date: 2019 to 2021

Collection

Data from: North American Monsoon Impacts Southern California’s Coastal Low Clouds

This collection contains data from "North American Monsoon Impacts Southern California’s Coastal Low Clouds" (Clemesha et al. 2023). Data files include: satellite-derived Coastal Low Cloudiness (CLC) for May - September 1996 - 2020, seasonal cycle fit of CLC used to create daily anomalies, San Diego airport cloud cover, precipitable water content from 850 to 300 hPa from observations in southern and northern California, a previously published single column model radiative scheme with input and outputs files used in this study.
Date: May through September, 1996 to 2020

Collection

Data from: Observations and Modeling of Ocean Circulation in the Seychelles Plateau Region

This collection contains raw and processed data from a variety of velocity, pressure, temperature and salinity sensors deployed from December 2016 to March 2019 over the Seychelles Plateau and a subset of an Ocean General Circulation POP model from the South Tropical Indian Ocean.
Date: Data: 2015 to 2019; Model: 1993 to 2009

Collection

Data from: Observations of Double Diffusive Staircase Edges in the Arctic Ocean

CTD profiles collected in the Canada Basin with a Shallow Water Integrated Mapping System (SWIMS).
Date: 2015-09-18 to 2015-09-20

Collection

Data from: Observations of strongly modulated surface wave and wave breaking statistics at a submesoscale front

This collection contains data presented in Vrecica et al 2021, including an overview of a submesoscale front, wave statistics, and wave breaking statistics.
Date: 2018-04-17

Collection

Data from: Observations of surface cobbles at two southern California beaches

Beach elevations were surveyed quarterly between January 2008 and July 2018 on cross-shore transects from the back beach to about 8 m water depth using GPS equipped vehicles.
Date: 2008 to 2018

Collection

Data from: Observations of Surface Gravity Wave Spectra from Moving Platforms

This collection consists of ocean and atmospheric observations (e.g., waves and winds) collected off the coast of San Diego and San Francisco California from instrumented Boeing Liquid Robotics SV3 Wave Gliders.
Date: 2020-09-01 to 2021-11-04

Collection

Data from: Observations of Tidally Driven Turbulence over Steep, Small-scale Topography Embedded in the Tasman Slope

In-situ observations from the Tasman Tidal Dissipation Experiment (TTIDE) collected around a small-scale bump embedded in the continental slope of Tasmania.
Date: 2015-01 to 2015-03

Collection

Data from: Ocean Surface Salinity Response to Atmospheric River Precipitation in the California Current System

Oceanic and atmospheric measurements, reanalysis and modeled outputs in the California Current System.
Date: 1992 to 2019

Collection

Data from: Overcrowded Housing Reduces COVID-19 Mitigation Measures and Lowers Emotional Health Among San Diego Refugees from September to November of 2020

Data for the present cross-sectional study were collected between September 2020 and November 2020 as part of PANA’s biannual community survey to address the primary research question: What is the association between housing and COVID-19 vulnerability?
Date: 2020-09 to 2020-11

Collection

Data from: Plankton energy flows using a global size-structured and trait-based model

This collection includes a global 20 year (1990-2009) climatology of diagnostic and prognostic variables for the Size-based Plankton Ecological TRAits (MARBL-SPECTRA) model.
Date: 1990 to 2009

Collection

Data from: QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations

The data set contains the files necessary to recalculate/reproduce the unbinding rates of ligands for the model host-guest systems and Hsp90-inhibitor complexes in the paper "QMrebind: Incorporating quantum mechanical force field reparameterization at the ligand binding site for improved drug-target kinetics through milestoning simulations."
Date: 2021 to 2023

Collection

Data from: Quantifying influence of human choice on the automated detection of Drosophila behavior by a supervised machine learning algorithm

This data collection contains original movie files, files derived from a tracking program (FlyTracker) and a machine learning-based behavioral classification suite (JAABA), and behavior classifiers for Drosophila social behaviors. These constitute source data of our publication (Leng, X., et al., 2020, in press). With our custom codes (available at https://github.com/asahinak/Leng_Wohl_etal_2020_JAABA_vs_human_annotation), readers can reproduce all the results presented in the article.
Date: 2015-03 to 2018-09

Collection

Data from: Quantitative regional observations of the geological influence on primary sandy beaches

The dataset includes mapped beach elevations, and gravel/bedrock locations in GeoTIFF format.
Date: 2017-10-01 to 2021-03-31

Collection

Data from: Readily Available Primary Aminoboranes as Powerful Reagents for Aldimine Synthesis

Date: 2017 to 2018

Collection

Data from: Retrieval of the Sea Spray Aerosol Mode from Submicron Particle Size Distributions and Supermicron Scattering during LASIC

This collection contains sea spray mode fitting parameters retrieved from Mie inversion of submicron size distributions and supermicron scattering during the LASIC and NAAMES campaigns. Sea spray mode retrieval and Mie scattering codes are also provided.
Date: 2020 to 2022

Collection

Data from Scripps Research Expeditions 1953-2005

Data and documents from Scripps Institution of Oceanography research vessel expeditions from 1953-2005, including geophysical, water column, and sea surface measurements.
Date: 1953 to 2005

Collection

Data from: Seasonal cycle and annual reversal of the Somali Current in an eddy-resolving global ocean model

The dataset includes a subset of model output from a global 0.1-deg CORE-II forced POP simulation near the region of the Arabian Sea, supporting the Journal of Geophysical Research: Oceans article with the same name.
Date: 2005 to 2009

Collection

Data from: SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine

This data set contains the files necessary to recreate the results in the paper "SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine".
Date: 2020-08 to 2022-03

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