Browse by Collection: UCSD Research Data Collections
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Collection
Carbonaceous Aerosol Particle Measurements from Southeast Atmosphere Study (SOAS) 2013 in Look Rock, Tennessee, USA
- HR-Tof-AMS submicon mass spectra for ensemable mass and single paritcles (by LS), Fourier Transform Infrared (FTIR) spectroscopic analysis of organic functional groups of submicron particles,and size distributions at Look Rock during SOAS 2013.
- Date: 2013-06-01 to 2013-07-18
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Collection
The Bangarang Project
- Data associated with the "Bangarang Project", Eric Keen's dissertation study on the foraging ecology of whales in the Kitimat Fjord System, British Columbia.
- Date: 2013-05 to 2015-09
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Collection
Data from: Instrumented Wave Gliders for Air-Sea Interaction and Upper Ocean Research
- This collection regroups data sets collected during four major field programs from 2013 to 2020 from a fleet of Wave Gliders specifically designed and instrumented for air-sea interaction and upper ocean observations by the Air-Sea Interaction Laboratory at Scripps Institution of Oceanography.
- Date: 2013 to 2020
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Collection
Data from: Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning
- The kinetic rate constants of four biochemically relevant ligand-receptor systems were estimated and described in a publication. This collection includes input files, output files, trajectories, and statistics associated with the study.
- Date: 2013 to 2015
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Collection
Observations of Solar Analog Field Stars from the Hamilton Echelle Spectrograph at Lick Observatory
- This observing program used the Hamilton Echelle Spectrograph on the three meter Shane telescope at Lick Observatory to obtain high resolution spectroscopic observations of 211 solar analog field stars.
- Date: 2013 to 2014
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Collection
Data from: Latent profile analysis of objectively measured sleep, physical activity, and sedentary time and associations with health in adult women
- This dataset represents the analysis variables for a group of 372 women collected at 4 different sites across the United States, including sleep quality, physical activity and sedentary behaviors.
- Date: 2012-10-10 to 2014-01-13
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Collection
Data from: The relations between sleep, time of physical activity, and time outdoors among adult women
- Exploring the relation between physical activity, time spent outdoors and sleep quality and duration.
- Date: 2012-10-10 to 2014-01-13
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Collection
Measurements of Generated and Ambient Marine Aerosol Particles in August 2012 on board the R/V Ronald H. Brown during the Western Atlantic Climate Study (WACS)
- Measurements of generated marine aerosol particle physical and chemical properties.
- Date: 2012-08-19 to 2012-08-27
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Collection
Aerosol and Cloud Observations in La Jolla, CA, in May-June 2011 during SOLEDAD (Stratocumulus Observations of Los-Angeles Emissions Derived Aerosol-Droplets)
- Measurements of polluted marine aerosol and cloud droplet chemical and physical properties at Mt. Soledad and Scripps Pier in La Jolla, California.
- Date: 2012-05-01 to 2012-06-18
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Collection
100 Island Challenge Collection
- The 100 Island Challenge is a collaborative effort to describe the variation of coral reefs from across the globe. We combine classical field surveys with innovative imaging and data technologies to archive reefs digitally and watch how populations change through time.
- Date: 2012 to present
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Collection
Center for Environmental Imaging Collection
- The Center for Environmental Imaging (CEI) is an effort to digitally archive imagery of the natural world. This collection includes image datasets from a diversity of projects and environmental habitats.
- Date: 2012 to present
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Collection
Data from: Carbonic Anhydrases, EPF2 and a Novel Protease Mediate CO2 Control of Stomatal Development
- RNA-Seq experiments analyzing the Arabidopsis response to low and elevated carbon dioxide growing conditions were conducted to capture early signaling events as seedlings were adapting to stress.
- Date: 2012 to 2013
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Collection
Data from: Characterizing Non-phase-locked Tidal Currents in the California Current System using High-frequency Radar
- Processed time series from HFR, power spectra from HFR, and fitted harmonic constituents from analyzed HFR. Data from a bottom pressure sensor used in suppl. Scripts used in the study to analyze and process data and to make visualizations.
- Date: 2012-01-01 to 2021-04-01
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Collection
Data from: Commitment Problems or Bidding Wars? Rebel Fragmentation as Peace Building
- This project uses an original dataset of field commanders in post-civil war Tajikistan to show that warlords from the victorious faction were as likely to be purged from the ruling coalition in a given year as warlords from the defeated faction.
- Date: 2012
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Collection
Data from: Spatial Analysis and Heritage Conservation: Leveraging 3-D Data and GIS for Monitoring Çatalhöyük Earthen Architecture
- This collection includes the remote sensing dataset recorded at Çatalhöyük, Turkey, between 2012-2017. The deterioration of earthen architecture through time was assessed by comparing these 3-D data and with geo spatial methods.
- Date: 2012 to 2017
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Collection
Marine background and plume aerosol measurements off the coast of California in July-August 2011 during E-PEACE (Eastern Pacific Emitted Aerosol Cloud Experiment)
- Measurements of background, generated smoke and cargo ship plume aerosol particles and their chemical and physical properties. Measurements include shipboard measurements near the ocean surface.
- Date: 2011-07-12 to 2011-08-18
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Collection
Data from: Urbanization-induced habitat fragmentation erodes multiple components of temporal diversity in a Southern California native bee assemblage
- A dataset of bees and plants in coastal sage scrub reserves and habitat fragments in coastal San Diego County, collected by PhD student Keng-Lou James Hung in 2011 and 2012.
- Date: 2011-04-12 to 2012-08-13
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Collection
California Smokers Cohort (CSC)
- The objective of this survey was to collect statewide data on tobacco-related behaviors, knowledge of and attitudes towards smoking, and monitoring the effect of State-initiated programs on individual target populations.
- Date: 2011 to 2012
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Collection
Data from: Immersive Visualization and Curation of Archaeological Heritage Data: Çatalhöyük and the Dig@IT App
- The purpose of this collection is to curate online all the 3D models and related metadata representing the three-dimensional stratigraphy of Çatalhöyük Building 89 as they are disseminated through the open source virtual reality application Dig@IT.
- Date: 2011 to 2015
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Collection
Data from: The influence of a cross-reef channel on the wave-driven setup and circulation at Ipan, Guam
- Currents, waves and water level observations from a shallow and wide shore-attached fringing reef at Ipan, Guam collected over a seven-week study period.
- Date: 2011 to 2012
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Collection
EarthCube Organization Materials
- This collection of materials managed by the EarthCube Coordination Office includes organizational and governance documents, white papers, presentations, reports, and event proceedings produced by EarthCube leaders, staff, and committee members.
- Date: 2011 to present
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Collection
Faces of select bees from San Diego, CA
- A collection of photographs featuring the faces of bees from San Diego, CA, showcasing the diversity of native bees inhabiting Southern California's bee biodiversity hotspot.
- Date: 2011 to 2014
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Collection
Cell Image Library
- This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. The purpose of this database is to advance research on cellular activity, with the ultimate goal of improving human health.
- Date: 2010-08-09 to present
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Collection
Carbonaceous Aerosol Particle Measurements from Cal-Mex 2010 in Tijuana, Mexico
- Single Particle Soot Photometer (SP2) measurements of aerosol refractory black carbon (BC) content for individual particles and Fourier Transform Infrared (FTIR) spectroscopic analysis of organic functional groups of submicron particles at Parque Morelos during Cal-Mex 2010 from 15 May to 30 June.
- Date: 2010-05-15 to 2010-06-30
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Collection
Measurements of Generated and Ambient Marine Aerosol Particles in May and June 2010 on board the R/V Atlantis during the California Nexus (CalNex) Experiment
- Measurements of generated marine aerosol particle physical and chemical properties.
- Date: 2010-05-14 to 2010-06-08
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Collection
Center for Aerosol Impacts on Chemistry of the Environment (CAICE)
- A wide array of chemical, physical, and computational measurements, models, and data sets for laboratory-generated sea spray aerosols and model systems. Each item in the collection is associated with a published peer-reviewed manuscript.
- Date: 2010 to present
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Collection
Data from: DNA damage induced during mitosis undergoes DNA repair synthesis
- A study of the DNA repair response to laser-induced DNA damage in selected mitotic chromosomes.
- Date: 2010 to 2019
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Collection
Data from: Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package
- Data, functions, and scripts associated with "Harmonic Analysis of Non-Phase-Locked Tides with Red Noise Using the red_tide Package" (Kachelein et al. 2022).
- Date: 2010 to 2021
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Collection
Standard Operating Procedure Documents for Coral Reef Ecological Monitoring
- This collection contains documents describing methods used by the Sandin Lab to collect standardized coral reef community ecology data.
- Date: 2010 to Present
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Collection
California Cooperative Oceanic Fisheries Investigations (CalCOFI): Acoustic and Trawl Data
- This is a voluminous data set containing acoustic and trawl data collected on CalCOFI (California Cooperative Oceanic Fisheries Investigations) cruises.
- Date: 2009 to 2015
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Collection
CAVEcam Virtual Reality Photography Collection
- Full-surround 3-D images make up this collection of original and rendered composite images called CAVEcams which are very high-resolution images for both left and right eye, normally viewed in virtual reality systems, either CAVEs or HMDs.
- Date: 2009 to 2016
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Collection
Atmospheric Aerosol Submicron Particle Composition including Organic Functional Group Concentrations at Arctic Locations
- This collection includes separate data sets of atmospheric aerosol submicron particle composition that include organic functional group concentrations at locations within the Arctic.
- Date: 2008 to 2014
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Collection
Keith Rayner Eye Movements in Reading Data Collection
- This collection consists of data and materials from a subset of published eye movement studies of reading conducted in Keith Rayner’s Eyetracking Lab at UCSD from 2008-2015
- Date: 2008 to 2015
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Collection
SeaFET & SeapHOx
- Documentation for SeaFET and SeapHOx oceanographic sensors.
- Date: 2008 to 2021
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Collection
Data from: Using a Lagrangian particle tracking model to evaluate impacts of El Niño-related advection on euphausiids in the southern California Current System
- These supplemental animations depict particle backtracks for six euphausiid species sampled in the southern California Current System in spring, 2008-2017. The particle model runs four months backward to determine winter water mass origins.
- Date: 2007-11-01 to 2017-03-31
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Collection
Western Pacific Atmospheric River Object Data from MODE detection software using West-WRF, GEFS, and MERRA-2
- The collection contains NetCDF files of atmospheric river objects as processed through the Method for Object-based Diagnostic Evaluation software.
- Date: 2006-12 to 2017-03
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Collection
Abraham A. Palmer Lab Research Data Collection
- We are studying the relationship between genotype and phenotype, especially behavioral phenotypes. Palmer Lab members collaborate on federally-funded projects that use a variety of species including humans, rats, mice, and zebrafish. A major focus of this work has been on developing and refining methods for genome-wide association studies (GWAS) in model organisms and integrating these results with expression QTLs (eQTL) and other -omics to identify specific and testable hypotheses about the relationship between genes and behavior.
- Date: 2006 to present
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Collection
Hydrographic Doppler Sonar System (HDSS): Acoustic ocean current profiling data from the R/V Revelle
- The Hydrographic Doppler Sonar System on the R/V Revelle provides profiles of absolute ocean current and acoustic scattering strength in support of scientific operations with 50kHz & 140kHz sonars capable of sampling between 20m and 700–1100m and between 20m and 150–350m, respectively.
- Date: 2006 to 2017
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Collection
CLIvar and MOde water Dynamics Experiment (CLIMODE) and Antarctic Intermediate Water (AAIW) Float Data Archive
- Calibrated and uncalibrated data from 12 Argo-equivalent, Webb Research ApexSBE profiling floats in the North Atlantic's Eighteen Degree Water region (CLIMODE), and southeast Pacific’s Subantarctic Mode Water region. Sensors: pressure, temperature, salinity, and Aanderaa optode oxygen.
- Date: 2005-11-10 to 2008-05-21
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Collection
Bee Research Methods: Video Demonstrations
- This collection shows bee behaviors and methods used to study bee behaviors.
- Date: 2005 to 2014
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Collection
Daily POP Model Output over the Equatorial Indian Ocean
- Daily POP Model output (2005-2009) extracted over the equatorial Indian Ocean.
- Date: 2005 to 2009
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Collection
Data from: Mechanisms of heat flux across the Southern Greenland continental shelf in 1/10° and 1/12° ocean/sea ice simulations
- Volume and heat fluxes across the Greenland continental shelf in two eddy-active coupled ocean/sea-ice simulations.
- Date: 2005 to 2009
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Collection
Data from: Seasonal cycle and annual reversal of the Somali Current in an eddy-resolving global ocean model
- The dataset includes a subset of model output from a global 0.1-deg CORE-II forced POP simulation near the region of the Arabian Sea, supporting the Journal of Geophysical Research: Oceans article with the same name.
- Date: 2005 to 2009
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Collection
Data from: 'Whale Wave': shifting strategies structure the complex use of critical fjord habitat by humpbacks
- This collection contains the data, R programming files, and detailed protocols for various aspects of analysis for the publication: Keen et al. 2016. "Whale Wave": shifting strategies structure the complex use of critical fjord habitat by humpbacks.
- Date: 2005 to 2015
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Santa Fe Light Cone Simulation research project files
- This project was the result of an ongoing effort by the Laboratory for Computational Astrophysics, leading to development of the Enzo simulation software capable of a seven-level adaptive mesh refinement (AMR) cosmology simulation.
- Date: 2005 to 2012
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Collection
Teaching Bee
- This collection of documents provides teaching exercises and information for instructors of students ranging from junior high school through college.
- Date: 2005 to 2013
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Collection
Khirbat en-Nahas Project (Jordan)
- A collection of archaeological artifacts and data for the excavation of the Khirbat en-Nahas site, and exploration of Iron Age state formation in southern Jordan.
- Date: 2002 to 2009
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Collection
Scripps Argo Trajectory-Based Velocity Product
- This collection contains absolute velocity estimates from quality controlled Argo trajectory files. Both Scripps trajectory products include trajectories from Core, BGC and Deep Argo floats starting in 2001. The Scripps trajectory products provide velocities between 800-1200 dbar or 100-6200 dbar.
- Date: 2001 through 2020
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Collection
BindingDB: Measured Binding Data for Protein-Ligand and Other Molecular Systems
- This collection contains the full BindingDB dataset of experimental protein-ligand and host-guest binding data.
- Date: 2000 to present
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Collection
Data from: A Climatic Sand Management Model for Cardiff State Beach, CA
- Annual mean beach width and nearshore sand volume survey estimates for 2000-2019 at South Torrey Pines and Cardiff State Beach, CA, and associated sediment budget modeling code for Cardiff State Beach.
- Date: 2000 to 2021